Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900080155.1_202016-11-03] 24 sequences; 20,625,025 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq23 264 2e-64 seq13 134 2e-25 seq4 95.1 2e-13 >seq23 Length=283388 Score = 264 bits (292), Expect = 2e-64 Identities = 401/558 (72%), Gaps = 22/558 (4%) Strand=Plus/Plus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| |||||||| || ||||||||||| ||||| |||||||||||||| |||||| Sbjct 279010 GATCTGGCAAATGTAC-AAGAAGGCCGAGGCTTCCTTCTGGACCGCCGAGGAAATCGACC 279068 Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGTC---GCTGAGCGACGACGAGCGCCATTTCATCA 1455891 || | ||| | |||||| ||| | |||| ||||||| || |||||| Sbjct 279069 TCTCCAAGGACCTTCACGACTGGGACAACAAGCTCAACGACAACGAGCGTCACTTCATCT 279128 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 |||||||| ||||| || |||||| || || ||||| ||||||||| | || Sbjct 279129 CTCACGTCCTTGCCTTCTT-CGCCGCTTCTGACGGTATCGTCAACGAGAACCTCGTCGAG 279187 Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011 ||||| | |||||||| | || || || | || ||||| ||||||||| Sbjct 279188 CGCTTCAGTTCCGAGGTCCAGGCCGCCGAAGCCCGATGCTTCTACGGTTTCCAGATCATG 279247 Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCG 1456071 || || ||||||||||| ||||||||||||||||| |||||||||||| || || || Sbjct 279248 ATGGAGAACATCCACTCCGAAACCTACTCGCTCCTCATCGACACCTACATCCGCGAGCC- 279306 Query 1456072 GTCGAGAAG---GACCACCTCTTTCGCGCCATCGACACGGT-GCCGTCGGTGAGGAAAAA 1456127 |||| || || |||||| |||| |||| || | ||||| || | ||| || Sbjct 279307 --CGAGCAGCGCGAGTTTCTCTTTGACGCCGTCGAGACTATCCCCGTC-GTCAAGAAGAA 279363 Query 1456128 GGCCGACTGGGCGATGAAGTGGATCAACAA--GGAGGGCCTCGACACTTTGCCGAGCGGC 1456185 |||||| ||||| | ||||||||| | | | |||| | ||| || ||||| | Sbjct 279364 GGCCGAATGGGCCCTTCGATGGATCAACGACCGCAAGGCCAC----CTTCGCTGAGCGTC 279419 Query 1456186 TCGTCGGCTTTGCCG-CGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTT 1456244 |||| | |||||||| |||||| || ||||| ||||| ||| || | | ||||| | Sbjct 279420 TCGTTGCCTTTGCCGCCGTCGAAGGTATCTTCTTCTCAGGCTCCTTTGCCTCGATCTTCT 279479 Query 1456245 GGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGC 1456304 |||||||||||||||| ||||||||||||| || ||| |||||| | ||| ||| Sbjct 279480 GGCTCAAGAAGCGCGGTCTCATGCCCGGTC-TCACCTTCTCCAACGAGCTCATCTCTCGT 279538 Query 1456305 GACGA-AGTTTTCACCCC 1456321 ||||| || ||||| || Sbjct 279539 GACGAGGGTCTTCACACC 279556 >seq13 Length=613501 Score = 134 bits (148), Expect = 2e-25 Identities = 207/291 (71%), Gaps = 6/291 (2%) Strand=Plus/Plus Query 259894 CATGTCGCAGCAGTTGTTCACCTCA-GCGACGCCCACGCTCTTTAATGCCGGCACGCCGC 259952 ||||||||| ||| || || ||| || |||| |||||||| || ||||| || || | Sbjct 64904 CATGTCGCAAAAGTACTTTAC-TCATGCCTCGCCAACGCTCTTCAACGCCGGTACCCCCC 64962 Query 259953 GCCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCT 260012 ||| ||| |||||||| || || | |||||||| || |||||||| || |||| Sbjct 64963 ACCCTCAGCTCTCGTCGTGTTTCCTTGTCACCATGAAGGATGACTCGATCGACGGGATCT 65022 Query 260013 ATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCG 260072 | ||||| |||||| || || | ||||||||| | ||||| || |||||| | | Sbjct 65023 ACGACACCCTCAAGACCTGTGCCATGATCTCCAAGACCGCCGGTGGTATCGGTCTCAACA 65082 Query 260073 CACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTC--CAACGG 260130 ||| | || | | ||| | ||| | || || |||||||| ||| |||||| Sbjct 65083 TCCACTGCATTCGTGGTACCGGCTCTTACATTGCCGGTACCAACGGT--GTCAGCAACGG 65140 Query 260131 CCTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCA 260181 | ||||||||||| || || || ||| |||| || || ||||||||||| Sbjct 65141 TATCGTGCCCATGCTCCGTGTCTTCAACAACACTGCTCGTTACGTCGACCA 65191 >seq4 Length=1714877 Score = 95.1 bits (104), Expect = 2e-13 Identities = 168/244 (69%), Gaps = 6/244 (2%) Strand=Plus/Plus Query 724899 TACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCC 724958 ||||| ||| |||||| || || |||||||| |||||| |||| | ||| Sbjct 201526 TACTCCACCTACATCTACCGTGTTCTTAAGCAGGTTCACCCCGACACCGGT-----ATC- 201579 Query 724959 TCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGC 725018 || |||||| ||||| | || | ||||| || || | ||||| |||| ||||||| | Sbjct 201580 TCGAACAAGGCCATGGCCATTCTTAACTCTTTCGTTCAGGACATCTTCGAGCGCATCGCC 201639 Query 725019 ACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATC 725078 || |||||| | || || | ||||||| || ||| |||| |||||| Sbjct 201640 ACTGAGGCCTCTAAGCTTGCTTCGTACAACAAGAAGTCGACCATCTCTTCGCGAGAGATC 201699 Query 725079 CAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGC 725138 |||||||| || || || ||| | | ||| || || ||| ||||||| |||| || || Sbjct 201700 CAGACCGCTGTCCGTCTCATCCTCCCCGGTGAGCTTTCCAAGCACGCCATCTCGGAAGGT 201759 Query 725139 ACCA 725142 |||| Sbjct 201760 ACCA 201763 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177808885155888