Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900080155.1_202016-11-03] 24 sequences; 20,625,025 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq13 212 8e-50 seq23 96.9 4e-15 >seq13 Length=613501 Score = 212 bits (234), Expect = 8e-50 Identities = 900/1398 (64%), Gaps = 39/1398 (3%) Strand=Plus/Minus Query 110707 GTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 110766 ||| ||||| | ||||| || || ||||| || || |||||||| || ||| || Sbjct 66206 GTAAATGTTCGAAGTGTAGGGCTCGAAGCACTCGTTGAAGCCCAAGATCTGACTGGTCGA 66147 Query 110767 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTC 110826 || || ||||| ||||||| ||| || |||||||||||| | || || | Sbjct 66146 AGCAGTGGGCATGGGTGCCAACAAGAGTGAGTTACGAAGACCGTGCTTGGCAATCTTAGC 66087 Query 110827 CTTGAGAACATCCCAGTCGTAGTTGA-GCTTGGTTTCACCTTCCCACATGTCAAACTGAA 110885 |||||| | ||||||| || | | || | || ||||||||||| |||||| Sbjct 66086 CTTGAGCGAAGCCCAGTCCCAGAGGTCGGAGGGAGTGACGC-CCCACATGTCATACTGAA 66028 Query 110886 GCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCA 110945 | | || ||||| ||||| ||||| | | || || |||| || || | | ||||| Sbjct 66027 GTTCTCCCTGGGAAGCGGGCGAACCTTGGTATGTCTCGTAGGTGCCGTGCTCCTGAGCCA 65968 Query 110946 ATTCACA-GCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATC 111004 | || || | |||| || || | |||||||| ||||| || ||||| | | |||| Sbjct 65967 ACTCGCACGATCGC-TCGAGAGCGGCGTGATAGATGGTCTCGAAGATCTGCACGTTCAAA 65909 Query 111005 TCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCT 111064 || ||| || || || || || | | || ||| |||| |||||||| Sbjct 65908 CGACGCGCCTCAGGGGACTCGAAGGCATAACCCATGATCATGAATGCATCGGCGAGACCC 65849 Query 111065 TGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGA 111124 |||||||| | ||| || || | ||| ||||| || || || || |||||||| Sbjct 65848 TGAACACCGATACCGATGGGACGGTGACGCATGTTGGATCGACGAGCTTCTTCAACGGGG 65789 Query 111125 TAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACA-AT--CTTTGT-GATTTC 111180 || | || |||| |||| ||| | || ||| || || ||||| || || Sbjct 65788 TAGTAGTTGATGTCGATGATCTTGTTCAAGTTCTTG----CAGATGGCTTTGGCGACCTC 65733 Query 111181 ATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGAT 111240 ||| || | |||| | || | | || | | || |||||||| Sbjct 65732 ATGCAGACGCTTGAAATCGTAGACCTTGGTAACAGGGTCGATGAAGGTGGGGAGGGCGAT 65673 Query 111241 TGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACA 111300 || ||||| ||||| ||||| |||||| | | |||||| | ||||| || || Sbjct 65672 GGAGGCCAAGTTGCAGACAGCGACCTCATCGGGGGCAGAGTACTCGATGATTTCGGTGCA 65613 Query 111301 TAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTT-GCACGCAT 111359 | |||||| | ||| || || || | ||||| ||||| ||| ||| ||| || | Sbjct 65612 GAGGTTGGAGCACTTGATGGTACCGAGGTTCTTCTGGTTGGACTTGCGGTTAGCA-GCGT 65554 Query 111360 CCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA-A 111418 |||||||||| ||| | || | || ||||| ||||| || | ||| || || | ||| | Sbjct 65553 CCTTGTAGAGGATGAAAGGATTACCGGTCTCGGTCTGAGACTCGAGGATGGCGTACCAGA 65494 Query 111419 ACATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGG 111478 | || | | || | || | || |||||||| |||||||| |||||| Sbjct 65493 GCTTCTGGGCCTTG-ACGGTTCGCTTACAGCGTCCCTCAGCCTCGTAGCGCTCGTAGAGA 65435 Query 111479 GCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGA 111538 |||||||| ||||| ||||| || || || || || || || | || Sbjct 65434 CGCTCAAACTCGTCACCGTAGCAGTCGGCAAGGCCGGGGCACTCGTTAGGGCACATGAGC 65375 Query 111539 GACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAA 111598 ||||| | ||| | ||| |||| ||||||||| || || || | ||| || | | Sbjct 65374 GACCAATCGCCATTCTGCTCGACCCTCTTCATGAAGAGATCGGGGACCCAAAGAGCGTAG 65315 Query 111599 AAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCC 111658 ||||| || | ||| | || || | ||| ||||| || || || |||||||| Sbjct 65314 AAGAGCTCACGGGCACGAACTTCCTCCTTACCGTGGTTCTTGCGCAAGTCGAGGAACTCG 65255 Query 111659 ATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC------ 111712 | || ||||| |||||| ||||||| |||| || | | || ||||| Sbjct 65254 AAGACATCCGAGTGCCAAGGCTCAATGTAGATAGCAAAGGCACC---AGGACGCTTGTTA 65198 Query 111713 CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCA 111772 ||| |||| | || || || || ||| ||| || || || ||||| || | ||||| Sbjct 65197 CCACCTTGGTCGACGTAACGAGCAGTGTTGTTGAAGACACGGAGCATGGGCACGATACCG 65138 Query 111773 T--CTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCAC--AT-CA-TGG 111826 | |||| ||| || || || ||| || | | | ||| || || ||| Sbjct 65137 TTGCTGA--CACCGTTGGTACCGGCAATGTAAG----AGCCGGTACCACGAATGCAGTGG 65084 Query 111827 ATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCA 111886 |||| | || ||||| || || ||| ||||| ||||| | | || || | Sbjct 65083 ATGTTGAGACCGATACCACCGGCGGTCTTGGAGATCATGGCACAGGTCTTGAGGGTGTCG 65024 Query 111887 TAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGT 111946 ||||| |||| ||| ||||| ||||| ||| || |||||| || || | ||| || Sbjct 65023 TAGATCCCGTCGATCGAGTCATCCTTCATGGTGACAAGGAAACACGACGAGAGCTGAGGG 64964 Query 111947 CTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATAC-CTTGGGACAT 112005 || ||||| || |||||||| ||||| | || ||| | || ||| ||| ||||| Sbjct 64963 TGGGGGGTACCGGCGTTGAAGAGCGTTGGCGAGGCATGAGT-AAAGTACTTTTGCGACAT 64905 Query 112006 CTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCG 112065 || ||| ||||| | || |||||||| | ||||| || |||| ||||| || Sbjct 64904 GAGGTTGTACGTCTCAATAGCACTCTCAATGTCCTGGCCGTGAATACCGACAGCGACACG 64845 Query 112066 CATGAACATGTACTGTGG 112083 ||||| ||||| ||| || Sbjct 64844 CATGATCATGTGCTGGGG 64827 >seq23 Length=283388 Score = 96.9 bits (106), Expect = 4e-15 Identities = 118/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 122658 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACC 122717 |||||| || ||| |||||||| || || || || || || || |||||| ||||| Sbjct 279565 GGCAAAATCGGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTGAGACC 279506 Query 122718 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 122777 ||||||||||| |||||||| | ||| | || | | || || || ||||||||||| Sbjct 279505 GGGCATGAGACCGCGCTTCTTGAGCCAGAAGATCGAGGCAAAGGAGCCTGAGAAGAAGAT 279446 Query 122778 ACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGG 122818 ||| || || ||||| |||| || || || ||||||| Sbjct 279445 ACCTTCGACGGCGGCAAAGGCAACGAGACGCTCAGCGAAGG 279405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031811590400