Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900080155.1_202016-11-03] 24 sequences; 20,625,025 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq23 118 1e-21 >seq23 Length=283388 Score = 118 bits (130), Expect = 1e-21 Identities = 361/557 (65%), Gaps = 6/557 (1%) Strand=Plus/Minus Query 48141 CATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGA 48200 || |||||||| |||||||| || || | | || | ||||| || || |||||| Sbjct 279567 CAGGCAAAATCGGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTGAGA 279508 Query 48201 CCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAAT 48260 |||||||| || || || || |||||||| || || | || || || || || ||||| Sbjct 279507 CCGGGCATGAGACCGCGCTTCTTGAGCCAGAAGATCGAGGCAAAGGAGCCTGAGAAGAAG 279448 Query 48261 ATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTT---CGTTGTGT 48317 || ||||| ||||| ||||| || || | ||| || | |||| | || || Sbjct 279447 ATACCTTCGACGGCGGCAAAGGCAACGAGACGCTCAGCGAAGGTGGCCTTGCGGTCGTTG 279388 Query 48318 ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTA 48377 ||||| || | ||||| || ||||||||||| || || || || || | || | | Sbjct 279387 ATCCATCGAAGGGCCCATTCGGCCTTCTTCTTGACGACGGGGATAGTCTCGACGGCGTCA 279328 Query 48378 AAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATT 48437 |||||||| | | | | || | ||| || || || | || || || Sbjct 279327 AAGAGAAACTCGCGCTGCTCGGGCTCGCGGATGTAGGTGTCGATGAGGAGCGAGTAGGTT 279268 Query 48438 TCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATC 48497 |||||||| || || || || ||||| || ||||| || |||| ||||| | | | Sbjct 279267 TCGGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCATCGGGCTTCGGCGGCC 279208 Query 48498 TGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCA 48557 || ||||| | || || || || | | ||||| || || || || ||| ||| || Sbjct 279207 TGGACCTCGGAACTGAAGCGCTCGACGAGGTTCTCGTTGACGATACCGTCAGAAGCGGCG 279148 Query 48558 AAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATT---CCAG 48614 || || || | || || || || | |||||| | || || || |||| Sbjct 279147 AAGAAGGCAAGGACGTGAGAGATGAAGTGACGCTCGTTGTCGTTGAGCTTGTTGTCCCAG 279088 Query 48615 TCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTT 48674 || | | || || || | || | ||| || || ||||| || || ||||| || || Sbjct 279087 TCGTGAAGGTCCTTGGAGAGGTCGATTTCCTCGGCGGTCCAGAAGGAAGCCTCGGCCTTC 279028 Query 48675 TTATACATATTCCATAT 48691 || ||||| | ||| || Sbjct 279027 TTGTACATTTGCCAGAT 279011 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694668591599360