Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900080155.1_202016-11-03] 24 sequences; 20,625,025 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq5 226 6e-54 seq11 187 5e-42 seq2 143 6e-29 >seq5 Length=755036 Score = 226 bits (250), Expect = 6e-54 Identities = 187/228 (82%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || || || ||||| || ||||| || || || ||||||||||| | Sbjct 175617 ACCACCACGAAGACGGAGGACGAGATGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCGGA 175676 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| |||||||| ||||| ||||| || || ||||||||||| || || |||||| || Sbjct 175677 AAGAGTGCGGCCGTCCTCGAGTTGCTTACCAGCAAAGATCAATCGCTGCTGGTCAGGAGG 175736 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||| |||||||| |||||||| || || || | ||||| |||||||| | ||||| Sbjct 175737 AATACCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAGGACTCGAC 175796 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||||||||||||||||||| |||| |||||| ||||| |||||||| Sbjct 175797 TTCGAGAGTGATCGTCTTACCGGTCAGAGTCTTGACGAAGATCTGCAT 175844 Score = 223 bits (246), Expect = 7e-53 Identities = 186/228 (82%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || || || ||||| || ||||| || || || ||||||||||| | Sbjct 175161 ACCACCACGAAGACGGAGGACGAGATGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCGGA 175220 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| |||||||| ||||| ||||| || || ||||||||||| || || |||||| || Sbjct 175221 AAGAGTGCGGCCGTCCTCGAGTTGCTTACCAGCAAAGATCAATCGCTGCTGGTCAGGAGG 175280 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||| |||||||| |||||||| || || || | ||||| |||||||| | ||||| Sbjct 175281 AATACCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAGGACTCGAC 175340 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 |||||||||||||||||| || ||||| ||||| ||||| |||||||| Sbjct 175341 TTCGAGAGTGATCGTCTTTCCTGTCAACGTCTTGACGAAAATCTGCAT 175388 Score = 223 bits (246), Expect = 7e-53 Identities = 186/228 (82%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || || || ||||| || ||||| || || || ||||||||||| | Sbjct 175389 ACCACCACGAAGACGGAGGACGAGATGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCGGA 175448 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| |||||||| ||||| ||||| || || ||||||||||| || || |||||| || Sbjct 175449 AAGAGTGCGGCCGTCCTCGAGTTGCTTACCAGCAAAGATCAATCGCTGCTGGTCAGGAGG 175508 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||| |||||||| |||||||| || || || | ||||| |||||||| | ||||| Sbjct 175509 AATACCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAGGACTCGAC 175568 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 |||||||||||||||||| || ||||| ||||| ||||| |||||||| Sbjct 175569 TTCGAGAGTGATCGTCTTTCCTGTCAACGTCTTGACGAAAATCTGCAT 175616 Score = 214 bits (236), Expect = 4e-50 Identities = 184/228 (81%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| ||||||| ||| | || || || || ||||| || || || ||||||||||| | Sbjct 174933 ACCTCCACGCAAGCGCAAGACGAGGTGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCGGA 174992 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| |||||||| ||||| ||||| || || ||||||||||| || || |||||| || Sbjct 174993 AAGAGTGCGGCCGTCCTCGAGTTGCTTACCAGCAAAGATCAATCGCTGCTGGTCAGGAGG 175052 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||| |||||||| |||||||| || || || | ||||| |||||||| | ||||| Sbjct 175053 AATACCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAGGACTCGAC 175112 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 |||||||||||||||||| || ||||| ||||| ||||| |||||||| Sbjct 175113 TTCGAGAGTGATCGTCTTTCCTGTCAACGTCTTGACGAAAATCTGCAT 175160 >seq11 Length=671998 Score = 187 bits (206), Expect = 5e-42 Identities = 178/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || || || ||||| || || || || |||||||||||||| | Sbjct 438414 ACCACCACGAAGACGGAGGACAAGATGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGA 438473 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || ||||||||||| || || || || || |||||||| | ||| || || ||| || Sbjct 438474 GAGGGTGCGGCCATCTTCAAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGATCAGGGGG 438533 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||||||||||||| || ||||| || || ||| | ||||| ||||| || | ||||| Sbjct 438534 AATACCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATGGTGTCAGAGGACTCGAC 438593 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || |||||||| ||||| || ||||||||||| ||||| |||||||| Sbjct 438594 CTCAAGAGTGATGGTCTTGCCGGTCAAAGTCTTGACGAAGATCTGCAT 438641 Score = 178 bits (196), Expect = 3e-39 Identities = 178/231 (77%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| || || || || | || || || |||||||||||||| Sbjct 360156 ACCACCACGAAGGCGGAGGACGAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCAA 360097 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| ||||| ||||| || || || || || |||||||| | ||| || || ||| || Sbjct 360096 AAGGGTGCGACCATCTTCGAGCTGCTTACCAGCAAAGATGAGACGCTGCTGATCAGGGGG 360037 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| || |||||||| |||||||| || || ||| | ||||| |||||||||| ||||| Sbjct 360036 AATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGAC 359977 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 ||||| ||||||||||||||||| | || ||||| || |||||||| || Sbjct 359976 CTCGAGGGTGATCGTCTTACCCGTGAGGGTTTTAACAAAGATCTGCATCTT 359926 Score = 154 bits (170), Expect = 3e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| || || ||||| | ||| || || || |||||||| || | Sbjct 438642 ACCACCACGGAGGCGGAGAACGAGATGAAGGGTGGACTCCTTCTGAATGTTGTAATCCGA 438701 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || ||||||||||| || || || || || ||||| | ||| || || ||| || Sbjct 438702 GAGGGTACGGCCATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGG 438761 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| || |||||||| |||||||| || || || | || || |||||||||| ||||| Sbjct 438762 AATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTGTCAATGGTGTCCGAAGGCTCGAC 438821 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||| ||||| || || | ||||| || || |||||||| Sbjct 438822 CTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 438869 >seq2 Length=2105630 Score = 143 bits (158), Expect = 6e-29 Identities = 154/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || || || || || | ||| || || |||||| ||||||| | Sbjct 253380 ACCACCACGGAGACGGAGGACAAGGTGAAGGGTGGACTCCTTCTGGATGCTGTAGTCCGA 253439 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||| ||||| || || || || |||||||| | ||| || ||||| || Sbjct 253440 GAGGGTGCGGCCGTCCTCGAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCGGGGGG 253499 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||||||||||| |||||||| || || ||| | ||||| ||||| |||| || || Sbjct 253500 GATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCCAC 253559 Query 283052 TTCGAGAGTGATCGTCTTACCCGT 283075 || || ||||| |||||||| || Sbjct 253560 CTCAAGGGTGATGGTCTTACCTGT 253583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046738878127696