Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900080155.1_202016-11-03] 24 sequences; 20,625,025 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq5 134 1e-26 seq11 120 2e-22 >seq5 Length=755036 Score = 134 bits (148), Expect = 1e-26 Identities = 160/215 (74%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 44125 CAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTC 44184 ||| || ||||| | ||||||||||| || |||||||| |||| || ||| |||| Sbjct 174948 CAAGACGAGGTGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGGCCGTC 175007 Query 44185 GTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTC 44244 || || ||||| || ||||||||||| |||||||| || | ||| | ||||||||| || Sbjct 175008 CTCGAGTTGCTTACCAGCAAAGATCAATCGCTGCTGGTCAGGAGGAATACCTTCCTTGTC 175067 Query 44245 CGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATC 44302 | ||||| ||| || ||| | |||||||| | ||| || || || | || ||| Sbjct 175068 CTGGATCTTGGCCTTGACATTGT--CGATGGTGTCCGAGGACTCGACTTCGAGAGTGATC 175125 Query 44303 GTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||||||| || | ||||| ||||| || ||||| Sbjct 175126 GTCTTTCCTGTCAACGTCTTGACGAAAATCTGCAT 175160 Score = 132 bits (146), Expect = 3e-26 Identities = 150/199 (75%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 44141 GTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCG 44200 ||||||||||| || |||||||| |||| || ||| |||| || || ||||| || Sbjct 175648 GTGCTCTCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCGAGTTGCTTACCA 175707 Query 44201 GCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT- 44259 ||||||||||| |||||||| || | ||| | ||||||||| ||| ||||| ||| Sbjct 175708 GCAAAGATCAATCGCTGCTGGTCAGGAGGAATACCTTCCTTGTCCTGGATCTTGGCCTTG 175767 Query 44260 -CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGG 44318 || ||| | |||||||| | ||| || || || | || |||||||| || || || | Sbjct 175768 ACATTGT--CGATGGTGTCCGAGGACTCGACTTCGAGAGTGATCGTCTTACCGGTCAGAG 175825 Query 44319 TCTTCACGAAGATTTGCAT 44337 |||| |||||||| ||||| Sbjct 175826 TCTTGACGAAGATCTGCAT 175844 Score = 129 bits (142), Expect = 4e-25 Identities = 149/199 (75%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 44141 GTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCG 44200 ||||||||||| || |||||||| |||| || ||| |||| || || ||||| || Sbjct 175192 GTGCTCTCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCGAGTTGCTTACCA 175251 Query 44201 GCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT- 44259 ||||||||||| |||||||| || | ||| | ||||||||| ||| ||||| ||| Sbjct 175252 GCAAAGATCAATCGCTGCTGGTCAGGAGGAATACCTTCCTTGTCCTGGATCTTGGCCTTG 175311 Query 44260 -CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGG 44318 || ||| | |||||||| | ||| || || || | || ||||||||||| || | | Sbjct 175312 ACATTGT--CGATGGTGTCCGAGGACTCGACTTCGAGAGTGATCGTCTTTCCTGTCAACG 175369 Query 44319 TCTTCACGAAGATTTGCAT 44337 |||| ||||| || ||||| Sbjct 175370 TCTTGACGAAAATCTGCAT 175388 Score = 129 bits (142), Expect = 4e-25 Identities = 149/199 (75%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 44141 GTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCG 44200 ||||||||||| || |||||||| |||| || ||| |||| || || ||||| || Sbjct 175420 GTGCTCTCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCGAGTTGCTTACCA 175479 Query 44201 GCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT- 44259 ||||||||||| |||||||| || | ||| | ||||||||| ||| ||||| ||| Sbjct 175480 GCAAAGATCAATCGCTGCTGGTCAGGAGGAATACCTTCCTTGTCCTGGATCTTGGCCTTG 175539 Query 44260 -CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGG 44318 || ||| | |||||||| | ||| || || || | || ||||||||||| || | | Sbjct 175540 ACATTGT--CGATGGTGTCCGAGGACTCGACTTCGAGAGTGATCGTCTTTCCTGTCAACG 175597 Query 44319 TCTTCACGAAGATTTGCAT 44337 |||| ||||| || ||||| Sbjct 175598 TCTTGACGAAAATCTGCAT 175616 >seq11 Length=671998 Score = 120 bits (132), Expect = 2e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || |||||||| || |||||| ||||||||||| || || ||| | || || Sbjct 360137 ACGAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCAAAAGGGTGCGACCATCTTCG 360078 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || |||||||| | |||||||||||| | || | |||||||| ||| Sbjct 360077 AGCTGCTTACCAGCAAAGATGAGACGCTGCTGATCAGGGGGAATTCCTTCCTTGTCCTGG 360018 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | | |||||||| | || || ||||| | || |||||||| Sbjct 360017 ATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGACCTCGAGGGTGATCGTCTTA 359958 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||||||||| || || ||||| ||||| Sbjct 359957 CCCGTGAGGGTTTTAACAAAGATCTGCAT 359929 Score = 116 bits (128), Expect = 3e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205 |||||| ||||||||||| |||| ||| ||| | || || |||||||| || ||||| Sbjct 438450 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCAAGCTGCTTGCCAGCAAA 438509 Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265 ||| | |||||||||||| | || | ||| ||||| ||| ||||| ||| | | Sbjct 438510 GATGAGACGCTGCTGATCAGGGGGAATACCCTCCTTGTCCTGAATCTTGGCCTTGACGTT 438569 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | |||||||| | ||| || ||||| | || || ||||| || || | ||||| || Sbjct 438570 GTCGATGGTGTCAGAGGACTCGACCTCAAGAGTGATGGTCTTGCCGGTCAAAGTCTTGAC 438629 Query 44326 GAAGATTTGCAT 44337 |||||| ||||| Sbjct 438630 GAAGATCTGCAT 438641 Score = 114 bits (126), Expect = 9e-21 Identities = 153/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || || ||||| ||| |||||| || ||||||||||| | ||| || | || || Sbjct 438661 ACGAGATGAAGGGTGGACTCCTTCTGAATGTTGTAATCCGAGAGGGTACGGCCATCCTCG 438720 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || || ||||| | |||||||||||| | || | |||||||| ||| Sbjct 438721 AGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGG 438780 Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| ||| || ||| | |||||||| | | || ||||| | || || |||| Sbjct 438781 ATCTTAGCCTTGACATTGT--CAATGGTGTCCGAAGGCTCGACCTCGAGGGTGATGGTCT 438838 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || ||||||||||| || ||||| ||||| Sbjct 438839 TGCCGGTGAGGGTCTTGACAAAGATCTGCAT 438869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359990294702808