Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900101485.1_202016-11-05] 2,546 sequences; 20,775,628 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq1109 140 4e-28 seq1432 113 5e-20 >seq1109 Length=147467 Score = 140 bits (154), Expect = 4e-28 Identities = 468/726 (64%), Gaps = 2/726 (0%) Strand=Plus/Plus Query 53948 CGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAAC 54007 || ||||||||||| || | | | | | || || || || | || ||||| | | Sbjct 96915 CGCTCAAACTCGTCACCGTAGCAGTCGGCAAGGCCGGGGCACTCGTTAGGGCACATGAGC 96974 Query 54008 GACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 54067 ||||| || || | | || || | ||||| |||||||| || | ||||||||| Sbjct 96975 GACCAATCGCCATTCTGCTCGACCCTCTTCATGAAGAGATCGGGGACCCAAAGAGCGTAG 97034 Query 54068 AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 54127 || || || | || | | |||||| || || ||||| | ||||||||| | Sbjct 97035 AAGAGCTCACGGGCACGAACTTCCTCCTTACCGTGGTTCTTGCGCAAGTCGAGGAACTCG 97094 Query 54128 ATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCT 54187 | | ||| || ||||| || || | ||| || | | | ||||| || ||||| || Sbjct 97095 AAGACATCCGAGTGCCAAGGCTCAATGTAGATAGCAAAGGCACCAGGACGCTTGTTACCA 97154 Query 54188 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTG 54247 || || || | ||| | ||| ||||| || | || | | ||| || | ||||| ||| Sbjct 97155 CCTTGGTCGACGTAACGAGCAGTGTTGTTGAAGACACGGAGCATGGGCACGATACCGTTG 97214 Query 54248 GATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT-AG 54306 |||| ||||| |||| || || || | ||||||| | | || | || Sbjct 97215 CTGACACCGTTGGTACCGGCAATGTAAGAGCCGGTACCACGAATGC-AGTGGATGTTGAG 97273 Query 54307 ACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCC 54366 ||| || || || || | || ||||| | || || || | || || ||||| || Sbjct 97274 ACCGATACCACCGGCGGTCTTGGAGATCATGGCACAGGTCTTGAGGGTGTCGTAGATCCC 97333 Query 54367 CTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 54426 || || |||||| ||||| | | || ||||| || | || | | || Sbjct 97334 GTCGATCGAGTCATCCTTCATGGTGACAAGGAAACACGACGAGAGCTGAGGGTGGGGGGT 97393 Query 54427 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTA 54486 || || || || | || || || || || ||||| | |||| || | || ||||| Sbjct 97394 ACCGGCGTTGAAGAGCGTTGGCGAGGCATGAGTAAAGTACTTTTGCGACATGAGGTTGTA 97453 Query 54487 CGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACAT 54546 |||||| ||||| || || ||| ||||| || || ||||||||||| | ||| Sbjct 97454 CGTCTCAATAGCACTCTCAATGTCCTGGCCGTGAATACCGACAGCGACACGCATGATCAT 97513 Query 54547 GTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGT 54606 |||||| || | ||| ||| |||| ||| || |||||||||||| || | || Sbjct 97514 GTGCTGGGGACGCTCAGCGACCTTGCCGTTGATACGGAGCAAGTAGGATCGCTCGAGGGT 97573 Query 54607 TTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAGTTT 54666 || ||||| || ||||||| ||||| || ||||| || || | |||| ||| | Sbjct 97574 CTTGAAACCGAAGAAGTTGTAGTGGAAGTCGCGCTCGTAGATGATGGCCGAGTCGAGCTG 97633 Query 54667 ATCCTT 54672 ||||| Sbjct 97634 GTCCTT 97639 >seq1432 Length=176812 Score = 113 bits (124), Expect = 5e-20 Identities = 173/246 (70%), Gaps = 3/246 (1%) Strand=Plus/Minus Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 || || |||||| ||| ||||||||||| | | || | |||||||| || ||||| Sbjct 172892 CAGGCAAAATCGGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTGAGA 172833 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 24254 |||||||| || || ||||| || ||||| || || || ||||| || || || ||||| Sbjct 172832 CCGGGCATGAGACCGCGCTTCTTGAGCCAGAAGATCGAGGCAAAGGAGCCTGAGAAGAAG 172773 Query 24255 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGC---GCTGTCATGT 24311 || ||||| || || |||||||||| || | || | | ||| || ||| | Sbjct 172772 ATACCTTCGACGGCGGCAAAGGCAACGAGACGCTCAGCGAAGGTGGCCTTGCGGTCGTTG 172713 Query 24312 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTA 24371 ||||| | ||||| ||||||||||| || || || || ||||| | || | | Sbjct 172712 ATCCATCGAAGGGCCCATTCGGCCTTCTTCTTGACGACGGGGATAGTCTCGACGGCGTCA 172653 Query 24372 AAGAGA 24377 |||||| Sbjct 172652 AAGAGA 172647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593702704810080