Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900101485.1_202016-11-05] 2,546 sequences; 20,775,628 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq1042 143 3e-29 >seq1042 Length=313568 Score = 143 bits (158), Expect = 3e-29 Identities = 461/714 (65%), Gaps = 46/714 (6%) Strand=Plus/Plus Query 145589 CAAAGTCCTCCGCCCTGAAGTCATCTATGTCCTCCACCCGCCTCAGGATCCTGAGCCTGG 145648 |||||||||| | |||||||||| || || | | | | || ||||| ||| Sbjct 41976 CAAAGTCCTCGTACTTGAAGTCATCGATATCGGTGATATGGCGCTTTATGTTGAGCTTGG 42035 Query 145649 GAAAGGGCCGGGGGCTCCTGGTC-AGCTGGAGCTTCAGGGGCTCCACGTGGTTGAGGTAG 145707 | |||||| || || | || ||||||| ||| || ||||| ||||| | |||| Sbjct 42036 GGAAGGGCAATGGT-TCACGCTCGAGCTGGATCTTGAGTGGCTCTACGTGATCTTTGTAG 42094 Query 145708 ACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCGGGCTCGAGGCCCGTGAGGTGGGCG 145767 ||||| ||||| |||| | | || ||| ||||||| | |||| | ||| Sbjct 42095 ACGTGAGCGTCTCCCATCGAAAGCACGAGTTCCTTGGGCTCGCAATCAGTGACTTTAGCG 42154 Query 145768 ACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCC 145827 | ||| ||||| |||| | ||||||||| ||||||||||| || |||| ||| | || Sbjct 42155 ATCATATAGGTGAGCAAAGCGTAGCTGGCAATGTTGAAGGGGACTCCCAACCCGAGATCG 42214 Query 145828 CCCGAGCGCTGGTACAGCTGGCAGGAGAGCT--------CCCCGCCC------------- 145866 | || || ||||||| || || ||||||| |||| || Sbjct 42215 CAGGAACGTTGGTACATTTGACAAGAGAGCTGCTTCTTGCCCCAACCCTTTGCGTAAGCG 42274 Query 145867 ---------GCCACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGC 145917 | ||| |||||||||| | | |||||| || || || |||||| | Sbjct 42275 TCGAGGTTGGAGACGAAGAACTGGCAGAACATGTGGCAAGGAGGGAGAGCCATGAGAGCA 42334 Query 145918 AGGTCCGCCGGGTTCCAGGCGGTGAGGACGAGCCTCCTGCTCTC---GGGGTTCCTCTTG 145974 || || |||||||| || |||| | || |||||| || |||||| ||||| Sbjct 42335 AGATCTTTGGGGTTCCATGCACTGAGCAAGA---TCCTGCGATCGGTGGGGTTGTTCTTG 42391 Query 145975 ATCTCCCCTATCAGGTCCCTGAGCTGGTCCACGCCCTGCCCCCGGTAATCTGTCTTGGAG 146034 |||| | || | || | | ||||| ||||| || || ||| || || | | || Sbjct 42392 ATCTTGTCAATGACTTCACGCAATTGGTCAACGCCTTGACCGGTGTAGTCGGTGTCGCAG 42451 Query 146035 TCCACGTACGCGGCCCCGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTCCCCG 146094 ||| ||| | || || ||||| | ||| ||||| |||||||| || |||| || || Sbjct 42452 TCCTTGTATTCTGCGCCAAAGTGTCGCCATTGGAAGCCGTAGACTGGACCCAAATCACC- 42510 Query 146095 GGCTC-CCTGTGCCCCAGCCCGGCCCG---GGCGAGGAAGTCCCGGGACCCGTTGGCGTC 146150 ||| || ||| || | | || | ||||||| || || || ||||| |||| Sbjct 42511 TTCTCGCCGGTG---TTGCAAGTCACGTGAGTCGAGGAACTCTCGCGATCCGTTACCGTC 42567 Query 146151 CCAGATCTTGACGCCCCTCGCGGAGAGCTCATTGGAGTCCGTGGACCCCCTGATGAACCA 146210 |||||| | |||||| | | | || |||||||| || || | ||||| Sbjct 42568 CCAGATGTGCACGCCCTTGTCAGTAAGAAGCTTGGAGTCGGTCTTGCCAGCCACAAACCA 42627 Query 146211 GAGCAGCTCTTCGAGGACCCCCCTCCAGAAGACCCTCTTGGTGGTCAGCAGGGG 146264 ||| ||||| || || || || | | ||||||| | ||| ||||| ||||| || Sbjct 42628 GAGGAGCTCCTCCAGTACGCCTCGCAAGAAGACACGCTTTGTGGTGAGCAGAGG 42681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590058020805840