Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900101485.1_202016-11-05] 2,546 sequences; 20,775,628 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq1432 381 6e-101 seq998 138 1e-27 seq1042 116 4e-21 >seq1432 Length=176812 Score = 381 bits (422), Expect = 6e-101 Identities = 428/569 (75%), Gaps = 5/569 (1%) Strand=Plus/Plus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||||||||| || |||||||||| |||||| | ||||| Sbjct 172336 ATCTGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGACCGCCGAGGAAATCGACCTC 172395 Query 116696 TCCAAGGACACGAGCGACTGGGAGCGCTTG---AACGACAACGAGCGCCATTTCATCAAG 116752 ||||||||| ||||||||| | | |||||||||||||| || |||||| Sbjct 172396 TCCAAGGACCTTCACGACTGGGACAACAAGCTCAACGACAACGAGCGTCACTTCATCTCT 172455 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||||| || ||||| |||||||| ||||| |||||||||||||| || |||||||| Sbjct 172456 CACGTCCTTGCCTTCTTCGCCGCTTCTGACGGTATCGTCAACGAGAACCTCGTCGAGCGC 172515 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 ||| | ||||| |||| ||||| || || ||||||||||| || |||||| ||| Sbjct 172516 TTCAGTTCCGAGGTCCAGGCCGCCGAAGCCCGATGCTTCTACGGTTTCCAGATCATGATG 172575 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAG 116932 |||||| | ||||| |||| || ||| |||||||||||| ||| | ||| | ||| Sbjct 172576 GAGAACATCCACTCCGAAACCTACTCGCTCCTCATCGACACCTACATCCGCGAGCCCGAG 172635 Query 116933 GAGAAGCTCCGTT-TGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGA 116991 || || || | || ||||| ||||||| || || |||||| |||||||||| Sbjct 172636 CAGC-GCGAGTTTCTCTTTGACGCCGTCGAGACTATCCCCGTCGTCAAGAAGAAGGCCGA 172694 Query 116992 GTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTT 117051 ||||| || || |||||| || | | ||||| |||||| ||||| || || ||||| Sbjct 172695 ATGGGCCCTTCGATGGATCAACGACCGCAAGGCCACCTTCGCTGAGCGTCTCGTTGCCTT 172754 Query 117052 CGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAA 117111 || |||||||| || ||||||| || ||| || ||| | || || ||||||||||| Sbjct 172755 TGCCGCCGTCGAAGGTATCTTCTTCTCAGGCTCCTTTGCCTCGATCTTCTGGCTCAAGAA 172814 Query 117112 ACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCT 117171 ||||| ||||||||||| || || ||| ||||||||||||||| | ||||||||||| Sbjct 172815 GCGCGGTCTCATGCCCGGTCTCACCTTCTCCAACGAGCTCATCTCTCGTGACGAGGGTCT 172874 Query 117172 GCATTGCGACTTTGCCTGTTTGCTGTTCA 117200 || ||| |||||||| | || |||| Sbjct 172875 TCACACCGATTTTGCCTGCCTCCTCTTCA 172903 >seq998 Length=480981 Score = 138 bits (152), Expect = 1e-27 Identities = 158/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || ||||| |||||||| | || ||||| || | Sbjct 89114 ATGCAGATCTTCGTCAAGACTTTGACCGGCAAGACCATCACTCTTGAGGTCGAGTCCTCT 89173 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || |||| ||||| ||||| || ||| | || || Sbjct 89174 GACACCATCGACAACG-TCAAGGCCAAGATTCAGGACAAGGAGGGTATTCCCCCTGATCA 89232 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||||| || ||||| ||||| || || | ||||||||| ||||||||| Sbjct 89233 GCAGCGTCTCATCTTTGCTGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCCGACTACAA 89292 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||| | || ||||||| || Sbjct 89293 CATCCAGAAGGAGTCGACTTTGCATCTTGT 89322 Score = 120 bits (132), Expect = 3e-22 Identities = 156/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || || || ||||| |||||||| || || |||||| |||| ||||| | Sbjct 167890 AAGATGCAGATCTTTGTTAAAACCCTCACGGGTAAGACGATCACCCTCGAGGTCGAGTCT 167831 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | |||| | | | |||| |||||| || || | ||||| || || || ||| | || Sbjct 167830 TCGGACACCATCGACAACG-TCAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCTGA 167772 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 ||||| || ||||||| || || || ||||| || || | |||||||| ||||| Sbjct 167771 TCAGCAGCGTCTCATCTTTGCTGGTAAGCAGCTCGAAGATGGTCGCACCCTTTTGGACTA 167712 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||||||| | || || || || || Sbjct 167711 CAACATCCAGAAGGAGTCTACCCTTCACCTCGT 167679 >seq1042 Length=313568 Score = 116 bits (128), Expect = 4e-21 Identities = 139/186 (75%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGA 40772 || || || ||||||||| | || || || | |||||| | | | |||| |||||| Sbjct 114500 ACAGGTAAGACCATCACCCTTGAGGTGGAGTCTTCCGACACCATCGACAACG-TCAAGGC 114558 Query 40773 AAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAA 40832 || || | ||||| ||||| |||||| | |||||||| || ||||||| || || || Sbjct 114559 CAAGATCCAGGACAAGGAGGGTATCCCCCCCGACCAGCAGCGTCTCATCTTTGCTGGTAA 114618 Query 40833 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 ||||| || |||| ||||||||| ||||||| ||||||||||||| |||| || || Sbjct 114619 GCAGCTCGAGGACGGCCGCACCCTCTCGGACTACAGCATCCAGAAGGAGTCCACCCTTCA 114678 Query 40893 TCTAGT 40898 || || Sbjct 114679 CCTTGT 114684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515202803148960