Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900101485.1_202016-11-05] 2,546 sequences; 20,775,628 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq1109 163 6e-35 >seq1109 Length=147467 Score = 163 bits (180), Expect = 6e-35 Identities = 413/626 (66%), Gaps = 9/626 (1%) Strand=Plus/Minus Query 248818 TACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAG 248877 ||| | ||||| | |||||| || || ||| ||| || | ||| || | |||||| Sbjct 97594 TACAACTTCTTCGGTTTCAAGACCCTCGAGCGATCCTACTTGCTCCGTATCAACGGCAAG 97535 Query 248878 ATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGAC 248937 ||| || || ||||||||| | ||||| || |||||||| |||||| | ||| Sbjct 97534 GTCGCTGAGCGTCCCCAGCACATGATCATGCGTGTCGCTGTCGGTATTCACGGCCAGGAC 97475 Query 248938 ATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGATGACACATGCCACA 248997 || ||||| | | |||||||||| | ||| || | | || |||||| | Sbjct 97474 ATTGAGAGTGCTATTGAGACGTACAACCTCATGTCGCAAAAGTACTTTACTCATGCCTCG 97415 Query 248998 CCGACGCTCTTCAACGCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCC 249057 || ||||||||||||||||||||| | || |||||| ||||| || ||| | || Sbjct 97414 CCAACGCTCTTCAACGCCGGTACCCCCCACCCTCAGCTCTCGTCGTGTTTCCTTGTCACC 97355 Query 249058 ATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGAC---GGCGAAGATT 249114 ||| | || ||||| ||||||| || || ||||| || | |||| || | ||| Sbjct 97354 ATGAAGGATGACTCGATCGACGGGATCTACGACACCCTCA---AGACCTGTGCCATGATC 97298 Query 249115 TCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTAC 249174 || || ||| || || ||||||||| | || | ||| || | | || || ||| Sbjct 97297 TCCAAGACCGCCGGTGGTATCGGTCTCAACATCCACTGCATTCGTGGTACCGGCTCTTAC 97238 Query 249175 ATCAAAGGTACAAATGGGGTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGTCC 249234 || ||||| || || ||||| | |||||||| ||| | || || ||| | | Sbjct 97237 ATTGCCGGTACCAACGGTGTCAGCAACGGTATCGTGCCCATGCTCCGTGTCTTCAACAAC 97178 Query 249235 ACCGCCAGGTTCATCAACCAGGCCGGGCGC---CGAAAGGGGTCGTTCGCCATGTATTTG 249291 || || | | | || |||| | || | || || | || || || || | Sbjct 97177 ACTGCTCGTTACGTCGACCAAGGTGGTAACAAGCGTCCTGGTGCCTTTGCTATCTACATT 97118 Query 249292 GAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGAG 249351 || |||||| | ||| | || |||||||| |||||| |||||| |||| || ||| Sbjct 97117 GAGCCTTGGCACTCGGATGTCTTCGAGTTCCTCGACTTGCGCAAGAACCACGGTAAGGAG 97058 Query 249352 CTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATGCGCCGC 249411 | | || ||||| |||||||||| || |||||| |||| | |||||| | Sbjct 97057 GAAGTTCGTGCCCGTGAGCTCTTCTACGCTCTTTGGGTCCCCGATCTCTTCATGAAGAGG 96998 Query 249412 GTCAAGGCCGACGGCGATTGGACGCT 249437 ||| || | ||||||||| |||| Sbjct 96997 GTCGAGCAGAATGGCGATTGGTCGCT 96972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073731373068928