Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900101485.1_202016-11-05] 2,546 sequences; 20,775,628 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1109 304 1e-77 seq1432 199 4e-46 seq998 98.7 9e-16 >seq1109 Length=147467 Score = 304 bits (336), Expect = 1e-77 Identities = 652/964 (68%), Gaps = 14/964 (1%) Strand=Plus/Plus Query 23017 GACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAAT 23076 || |||||| ||||| | ||||| || || ||||| || || | |||||| | || Sbjct 96668 GAGGGCGATGGAGGCCAAGTTGCAGACAGCGACCTCATCGGGGGCAGAGTACTCGATGAT 96727 Query 23077 TTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATT 23136 |||||| || || ||| ||||| || || || | || |||||||| || || || Sbjct 96728 TTCGGTGCAGAGGTTGGAGCACTTGATGGTACCGAGGTTCTTCTGGTTGGACTTGCGGTT 96787 Query 23137 -GCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCG 23195 ||| | ||||||||||| ||| | || | || |||||| ||| ||||||| ||| | Sbjct 96788 AGCA-GCGTCCTTGTAGAGGATGAAAGGATTACCGGTCTCGGTCTGAGACTCGAGGATGG 96846 Query 23196 CTCGCCACATAGTCTGAGCGTGAACACGTCGCACGTACCTGCCTTCTTCCTCGTACTTTT 23255 | ||| | |||| || | || |||| | | || || ||||||| | Sbjct 96847 CGTACCAGAGCTTCTGGGCCTTGACGGTTCGCTTACAGCGTCCCTCAGCCTCGTAGCGCT 96906 Query 23256 GGTACA-ACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGA 23314 ||| | |||| ||||| ||| ||||||| |||||||| |||||||| | | | || Sbjct 96907 CGTAGAGACGC-TCAAACTCGTCACCGTAGCAGTCGGCAAGGCCGGGGCACTCGTTAGGG 96965 Query 23315 CACATGAGACTCCACATTG--AGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCC 23372 |||||||| ||| || | | || | || || | |||| || ||||| || | || Sbjct 96966 CACATGAGCGACCA-ATCGCCATTC-TGCTCGACCCTCTTCATGAAGAGATCGGGGACCC 97023 Query 23373 ATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAAT 23432 | ||||||||||| || || ||||| || || ||||| || ||| |||||| ||| | Sbjct 97024 AAAGAGCGTAGAAGAGCTCACGGGCACGAACTTCCTCCTTACCGTGGTTCTTGCGCAAGT 97083 Query 23433 CCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTC 23492 | | || || || || |||| ||||| ||||| | ||| | ||||| || || || | Sbjct 97084 CGAGGAACTCGAAGACATCCGAGTGCCAAGGCTCAATGTAGATAGCAAAGGCACCAGGAC 97143 Query 23493 TCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCA 23552 ||| || || || || ||||||||||| || ||||||||| | || | ||||| |||| Sbjct 97144 GCTTGTTACCACCTTGGTCGACGTAACGAGCAGTGTTGTTGAAGACACGGAGCATGGGCA 97203 Query 23553 CGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGT 23612 ||| ||||||| | ||| || || | || || | | |||| | || Sbjct 97204 CGATACCGTTGCTGACACCGTTGGTACCGGCAATGTAAGAGCCGGTACCACGAATGCAGT 97263 Query 23613 GAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGT 23672 | | || || ||| || || ||| | | || || ||||| || || || || |||| Sbjct 97264 GGATGTTGAGACCGATACCACCGGCGGTCTTGGAGATCATGGCACAGGTCTTGAGGGTGT 97323 Query 23673 CGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCG 23732 ||||||| || ||||| ||| || || | | ||| | ||||||||| || | || | Sbjct 97324 CGTAGATCCCGTCGATCGAGTCATCCTTCATGGTGACAAGGAAACACGACGAGAGCTGAG 97383 Query 23733 CTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACA 23792 | ||| ||| |||| ||| || || || ||| || |||||||| | ||||| Sbjct 97384 GGTGGGGGGTACCGGCGTTGAAGAGCGTTGGCGAGGCATGAGTAAAGTACTTTTGCGACA 97443 Query 23793 TTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGC 23852 | || |||||||| || || || |||||||||| ||||| ||||||| ||||| | Sbjct 97444 TGAGGTTGTACGTCTCAATAGCACTCTCAATGTCCTGGCCGTGAATACCGACAGCGACAC 97503 Query 23853 GCATCATCATGTATTGAGGTCTCT---CGACCGTGACGCCGTTAATTTTGAACAGATATG 23909 |||| ||||||| || || | || ||||| | |||||| || || || || | Sbjct 97504 GCATGATCATGTGCTGGGGACGCTCAGCGACCTT---GCCGTTGATACGGAGCAAGTAGG 97560 Query 23910 AACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGG 23969 | || | | || || || || || ||| |||| ||||| || |||| | |||| Sbjct 97561 ATCGCTCGAGGGTCTTGAAACCGAAGAAGTTGTAGTGGAAGTCGCGCTCGTAGATGATGG 97620 Query 23970 CCGA 23973 |||| Sbjct 97621 CCGA 97624 >seq1432 Length=176812 Score = 199 bits (220), Expect = 4e-46 Identities = 488/734 (66%), Gaps = 27/734 (4%) Strand=Plus/Plus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 || ||| | |||||||| ||||| || || || || ||||||| ||| ||| | ||||| Sbjct 172336 ATCTGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGACCGCCGAGGAAATCGACCTC 172395 Query 57630 TCTAAGGATCTGAGCGATTGGGATTCC---CTCAAAGAATCTGAGAGAAATTTTATTAAA 57686 || ||||| || ||| ||||| | ||||| || ||| | | || || Sbjct 172396 TCCAAGGACCTTCACGACTGGGACAACAAGCTCAACGACAACGAGCGTCACTTCATCTCT 172455 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 ||||| | || || |||||||| || || ||||| || |||||||| | ||||| | Sbjct 172456 CACGTCCTTGCCTTCTTCGCCGCTTCTGACGGTATCGTCAACGAGAACCTCGTCGAGCGC 172515 Query 57747 TT---TTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCC 57803 || ||| || || || | | || || ||||||| ||||| || || | Sbjct 172516 TTCAGTTCC---GAGGTCCAGGCCGCCGAAGCCCGATGCTTCTACGGTTTCCAGATCATG 172572 Query 57804 ATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAAC 57863 || || ||| | || || |||| || ||||| |||||||| || ||| | | | Sbjct 172573 ATGGAGAACATCCACTCCGAAACCTACTCGCTCCTCATCGACACCTACAT------CCGC 172626 Query 57864 GA---CGAGAAACGT-AGA--CTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAG 57917 || |||| | || || || || |||| |||| || || |||| || ||| Sbjct 172627 GAGCCCGAGCAGCGCGAGTTTCTCTTTGACGCCGTCGAGACTATCCCCGTCGTCAAGAAG 172686 Query 57918 AAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTA 57977 ||||| || ||| | | |||||| || | || |||||| ||||| ||| | || Sbjct 172687 AAGGCCGAATGGGCCCTTCGATGGATCAACGACCGCAAGGCCACCTTCGCTGAGCGTCTC 172746 Query 57978 ATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGG 58037 | || || ||||||||||||||||| ||||| || ||| |||||| | || || ||| Sbjct 172747 GTTGCCTTTGCCGCCGTCGAAGGTATCTTCTTCTCAGGCTCCTTTGCCTCGATCTTCTGG 172806 Query 58038 ATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGAC 58097 | ||||| ||||| || |||||||| || || || ||||||| | || || || ||| Sbjct 172807 CTCAAGAAGCGCGGTCTCATGCCCGGTCTCACCTTCTCCAACGAGCTCATCTCTCGTGAC 172866 Query 58098 GAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAAC---CG 58154 |||||||| || || |||||||| ||||| | | | ||| |||| || | || Sbjct 172867 GAGGGTCTTCACACCGATTTTGCCTGCCTCCTCTTCAGCCAC---CTCAAGAAGCGCGCG 172923 Query 58155 ACGCGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTC 58214 | || | || | | || || |||||||||||| ||||| | ||||| | Sbjct 172924 CACCCCGACACCGTCCTCAAGATCATTTCCGAGGCGGTCGAAATCGAGATCGAGTTCTTG 172983 Query 58215 ACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATT 58274 ||| || | | || || ||| |||| |||||| | ||||||| ||||||| Sbjct 172984 ACCCAATCAATTCCTTGTGCGATGATCGGCATGAACCAAACGTTGATGTGTCAGTACATA 173043 Query 58275 GAGTTTGTTGCCGA 58288 ||||| ||||| Sbjct 173044 ACCTTTGTGGCCGA 173057 >seq998 Length=480981 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| || || ||||| || |||||| |||| || || || || Sbjct 88886 ATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGCCTTCG 88945 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | ||||| | || ||||||||||||| | || || || ||| Sbjct 88946 GACACCATTGACAATGTCAAGGCTAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCAG 89005 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || ||||||||||| ||| | || || || | ||||| ||| Sbjct 89006 CAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGTACCCTCTCGGATTACAAC 89065 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || || || || |||||||| || || Sbjct 89066 ATTCAGAAGGAGTCCACCCTTCATCTCGTTCT 89097 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| |||||| |||| ||||| || ||||| | || || || | || Sbjct 89114 ATGCAGATCTTCGTCAAGACTTTGACCGGCAAGACCATCACTCTTGAGGTCGAGTCCTCT 89173 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || ||||||||| || | || || || ||| Sbjct 89174 GACACCATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGTATTCCCCCTGATCAG 89233 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || || |||||||| ||| | ||||| || | ||| || ||| Sbjct 89234 CAGCGTCTCATCTTTGCTGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCCGACTACAAC 89293 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || || |||||| | ||||| || || Sbjct 89294 ATCCAGAAGGAGTCGACTTTGCATCTTGTCCT 89325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445752213484320