Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900101485.1_202016-11-05] 2,546 sequences; 20,775,628 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq1432 109 1e-18 seq1109 86.0 1e-11 >seq1432 Length=176812 Score = 109 bits (120), Expect = 1e-18 Identities = 165/233 (71%), Gaps = 5/233 (2%) Strand=Plus/Plus Query 101844 TCCCCGCCATCAAGAAGAAGGAGCAGTGGGCTATTAATTGGATGCAAAG----CAATAAC 101899 |||||| | |||||||||||| | ||||| || ||||| ||| | ||| | Sbjct 172670 TCCCCGTCGTCAAGAAGAAGGCCGAATGGGCCCTTCGATGGAT-CAACGACCGCAAGGCC 172728 Query 101900 GATTTGGCGGAACTAATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCA 101959 || || || | | ||||||||||| || || ||||| |||||||| || | Sbjct 172729 ACCTTCGCTGAGCGTCTCGTTGCCTTTGCCGCCGTCGAAGGTATCTTCTTCTCAGGCTCC 172788 Query 101960 TTCGCATCCATTTTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAAT 102019 || || || || |||||| ||||||| | ||| | |||| |||||||||| |||||| Sbjct 172789 TTTGCCTCGATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGTCTCACCTTCTCCAAC 172848 Query 102020 GAGTTCATTTCTAGGGACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTT 102072 ||| |||| ||| | ||||| |||||||| ||| ||||| ||| | || || Sbjct 172849 GAGCTCATCTCTCGTGACGAGGGTCTTCACACCGATTTTGCCTGCCTCCTCTT 172901 >seq1109 Length=147467 Score = 86.0 bits (94), Expect = 1e-11 Identities = 174/256 (68%), Gaps = 2/256 (1%) Strand=Plus/Plus Query 94786 CCGAGTCCTCCAGCAGTCTTGGAGATGATTGCCGCCTCCTTAAGAGTATCATAAATACCC 94845 |||| || || || ||||||||||| || || ||| || || || || || || Sbjct 97275 CCGATACCACCGGCGGTCTTGGAGATCATGGCACAGGTCTTGAGGGTGTCGTAGATCCCG 97334 Query 94846 TCAATGCTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGTTG-GGGTGTGACTGT 94904 || || ||||| | | | | |||||| ||||| || || || ||||| | || Sbjct 97335 TCGATCGAGTCATCCTTCATGGTGACAAGGAAACACGACGAGAGCTGAGGGTG-GGGGGT 97393 Query 94905 TCCACAATTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGACATGAGATCATA 94964 || || || || || || || ||||| ||||| || | ||||||||| | || Sbjct 97394 ACCGGCGTTGAAGAGCGTTGGCGAGGCATGAGTAAAGTACTTTTGCGACATGAGGTTGTA 97453 Query 94965 TGTTTCAATGACAGATTTGATGTCTGATCCGTGAATGCCGACAGCCACACGCATAATCAT 95024 || ||||| || | ||||| |||||||| |||||||| |||||||| ||||| Sbjct 97454 CGTCTCAATAGCACTCTCAATGTCCTGGCCGTGAATACCGACAGCGACACGCATGATCAT 97513 Query 95025 GTCCTGAGGGCGCTCA 95040 || ||| || |||||| Sbjct 97514 GTGCTGGGGACGCTCA 97529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989551719151430