Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900101485.1_202016-11-05] 2,546 sequences; 20,775,628 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq1042 107 2e-18 >seq1042 Length=313568 Score = 107 bits (118), Expect = 2e-18 Identities = 396/619 (64%), Gaps = 46/619 (7%) Strand=Plus/Plus Query 20925 AGGGGATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCC 20984 || || || ||||| | ||||| ||||| ||||| |||| | |||| | || | Sbjct 42071 AGTGGCTCTACGTGATCTTTGTAGACGTGAGCGTCTCCCATCGAAAGCACGAGTTC-CTT 42129 Query 20985 GGGGTCAGGC---CCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATG 21041 ||| || || | ||||| | |||||||| ||| || || | ||||||||||| ||| Sbjct 42130 GGGCTC--GCAATCAGTGACTTTAGCGATCATATAGGTGAGCAAAGCGTAGCTGGCAATG 42187 Query 21042 TTAAACGGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCC 21101 || || ||||| || | || | ||| ||| | ||||||| || || || |||| | Sbjct 42188 TTGAAGGGGACTCCCAACCCGAGATCGCAGGAACGTTGGTACATTTGACAAGAGAGCTGC 42247 Query 21102 ------CCCCGAGCCA---CGTAA---------------------AACTGACACAAAACG 21131 |||| | || ||||| ||||| || || | | Sbjct 42248 TTCTTGCCCCAACCCTTTGCGTAAGCGTCGAGGTTGGAGACGAAGAACTGGCAGAACATG 42307 Query 21132 TGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGCGCACATAACGATG 21191 || ||||||||||||||||| | || || || ||||||||| || | | | ||| Sbjct 42308 TGGCAAGGAGGGAGAGCCATGAGAGCAAGATCTTTGGGGTTCCATGCACTGAGCAAGATC 42367 Query 21192 CGCCGATC-GTGGGGCCGCCTGTTAATTAGATCCACCACGTAACGCAGCTGGTCCACCCC 21250 | ||||| |||||| | | || || || | || | ||||| ||||| || || Sbjct 42368 CTGCGATCGGTGGGGTTG-TTCTTGATCTTGTCAATGACTTCACGCAATTGGTCAACGCC 42426 Query 21251 CTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTACTCCGCCCCAAAATGTCTCCACTGGAA 21310 ||||| ||||| || |||| || |||| || || ||||| |||| ||| ||||| Sbjct 42427 TTGACCGGTGTAGTCGGTGTCGCAGTCCTTGTATTCTGCGCCAAAGTGTCGCCATTGGAA 42486 Query 21311 CCCGTACACCGGCCCCAGATCGCCCTCGCGGCGGTCCCCGAAGCCCTGCGCCGCCAAAAA 21370 ||||| || || |||| ||| || || || |||| ||| | | | | | || Sbjct 42487 GCCGTAGACTGGACCCAAATCACCTTCTCGCCGGTGTTGCAAGTCACGTGAGTCGAGGAA 42546 Query 21371 GGCGCGGGACCCGTGCGCGTCCCAAATTTTTACGCCGCGGCGCGACAGTTCG----GTGG 21426 | || || |||| ||||||| || | ||||| | | |||| | ||| Sbjct 42547 CTCTCGCGATCCGTTACCGTCCCAGATGTGCACGCC----CTTGTCAGTAAGAAGCTTGG 42602 Query 21427 AGTCGGTGGAGCCCCTGATAAACCACAGCAACTCCTCCACGACGCCCCTCCAAAACACCC 21486 ||||||| ||| | |||||| || | |||||||| ||||| | | | || || | Sbjct 42603 AGTCGGTCTTGCCAGCCACAAACCAGAGGAGCTCCTCCAGTACGCCTCGCAAGAAGACAC 42662 Query 21487 TTTTGGTGGTTAACAGAGG 21505 || ||||| | |||||| Sbjct 42663 GCTTTGTGGTGAGCAGAGG 42681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427762726378080