Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900101485.1_202016-11-05] 2,546 sequences; 20,775,628 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq1109 129 8e-25 seq1432 118 1e-21 >seq1109 Length=147467 Score = 129 bits (142), Expect = 8e-25 Identities = 446/694 (64%), Gaps = 4/694 (1%) Strand=Plus/Plus Query 71974 CCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATA 72033 || || || || || || ||||| | ||||| || |||| | | || | ||||| Sbjct 96948 CCGGGGCACTCGTTAGGGCACATGAGCGACCAATCGCCATTCTGCTCGACCCTCTTCATG 97007 Query 72034 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCT 72093 |||||||| || | ||||||||| || || || | || | | ||||| || || Sbjct 97008 AAGAGATCGGGGACCCAAAGAGCGTAGAAGAGCTCACGGGCACGAACTTCCTCCTTACCG 97067 Query 72094 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 72153 ||||| | ||||||||| | | | ||| || ||||| || || | ||| || Sbjct 97068 TGGTTCTTGCGCAAGTCGAGGAACTCGAAGACATCCGAGTGCCAAGGCTCAATGTAGATA 97127 Query 72154 GCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 72213 || | | || || || ||||| || || || || | ||| | ||| ||||| || | Sbjct 97128 GCAAAGGCACCAGGACGCTTGTTACCACCTTGGTCGACGTAACGAGCAGTGTTGTTGAAG 97187 Query 72214 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 72273 || | | ||| || | ||||| ||| |||| ||||| |||| || || || Sbjct 97188 ACACGGAGCATGGGCACGATACCGTTGCTGACACCGTTGGTACCGGCAATGTAAGAGCCG 97247 Query 72274 CTGGCACGAAT--ATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 72331 | ||||||| | || |||| |||| || || || || | || ||||| | | Sbjct 97248 GTACCACGAATGCAGTGGATGTTGA--GACCGATACCACCGGCGGTCTTGGAGATCATGG 97305 Query 72332 CGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAA 72391 | || || | || || ||||| || || || |||||| ||||| | | || | Sbjct 97306 CACAGGTCTTGAGGGTGTCGTAGATCCCGTCGATCGAGTCATCCTTCATGGTGACAAGGA 97365 Query 72392 AACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 72451 |||| || | || | | || || || || || | || || || || || | Sbjct 97366 AACACGACGAGAGCTGAGGGTGGGGGGTACCGGCGTTGAAGAGCGTTGGCGAGGCATGAG 97425 Query 72452 TAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGAT 72511 |||| | |||| |||| || ||||||||||||||||| || || ||| | Sbjct 97426 TAAAGTACTTTTGCGACATGAGGTTGTACGTCTCAATAGCACTCTCAATGTCCTGGCCGT 97485 Query 72512 GTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTA 72571 | || || || ||||||||||| | ||| ||||| || | ||| ||| |||| || | Sbjct 97486 GAATACCGACAGCGACACGCATGATCATGTGCTGGGGACGCTCAGCGACCTTGCCGTTGA 97545 Query 72572 TTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTC 72631 | | |||||||||| || | || || ||||| || ||||||| ||||| | Sbjct 97546 TACGGAGCAAGTAGGATCGCTCGAGGGTCTTGAAACCGAAGAAGTTGTAGTGGAAGTCGC 97605 Query 72632 GTTCGTAAATAATAACCGAATTGAGTTTATCCTT 72665 | ||||| || || |||| | ||| | ||||| Sbjct 97606 GCTCGTAGATGATGGCCGAGTCGAGCTGGTCCTT 97639 >seq1432 Length=176812 Score = 118 bits (130), Expect = 1e-21 Identities = 273/411 (66%), Gaps = 3/411 (1%) Strand=Plus/Minus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || || |||||| ||| |||||||| || | | || | |||||||| || ||||| Sbjct 172892 CAGGCAAAATCGGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTGAGA 172833 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAG 42184 |||||||| || || ||||| || ||||| || || || ||||| || || || |||||| Sbjct 172832 CCGGGCATGAGACCGCGCTTCTTGAGCCAGAAGATCGAGGCAAAGGAGCCTGAGAAGAAG 172773 Query 42185 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTG---TCATGT 42241 || ||||| || || |||||||||| || | ||| | | ||| || || | Sbjct 172772 ATACCTTCGACGGCGGCAAAGGCAACGAGACGCTCAGCGAAGGTGGCCTTGCGGTCGTTG 172713 Query 42242 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 42301 ||||| | ||||| ||||||||||| || || || || || || | ||| | | Sbjct 172712 ATCCATCGAAGGGCCCATTCGGCCTTCTTCTTGACGACGGGGATAGTCTCGACGGCGTCA 172653 Query 42302 AAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATT 42361 |||||| | | | | || | || || ||||| | || || || Sbjct 172652 AAGAGAAACTCGCGCTGCTCGGGCTCGCGGATGTAGGTGTCGATGAGGAGCGAGTAGGTT 172593 Query 42362 TCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACC 42421 || || || ||||| || || ||||| || |||||||| |||| ||| |||| || Sbjct 172592 TCGGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCATCGGGCTTCGGCGGCC 172533 Query 42422 TGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCA 42472 || || || | || || || || | | || ||||| || || |||||| Sbjct 172532 TGGACCTCGGAACTGAAGCGCTCGACGAGGTTCTCGTTGACGATACCGTCA 172482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671117840994960