Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900101485.1_202016-11-05] 2,546 sequences; 20,775,628 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq998 100 2e-16 >seq998 Length=480981 Score = 100 bits (110), Expect = 2e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTG 48582 |||||| ||| |||||| |||||||||||||| | | || | ||||| ||||| Sbjct 89089 ATGAAGGGTGGACTCCTTCTGAATGTTGTAATCCGAGAGGGTACGGCCATCCTCGAGCTG 89030 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| || || | || | |||||||||||| || | | |||||||||| || || Sbjct 89029 CTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTT 88970 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||||| | | ||||| || | || ||| ||||| || ||||| || ||||| Sbjct 88969 AGCCTTGACATTGTCAATGGTGTCCGAAGGCTCGACCTCGAGGGTGATGGTCTTGCCGGT 88910 Query 48703 GAGAGTTTTCACAAAAATCTGCATC 48727 ||| || || ||||| ||||||||| Sbjct 88909 GAGGGTCTTGACAAAGATCTGCATC 88885 Score = 84.2 bits (92), Expect = 2e-11 Identities = 149/213 (70%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTG 48582 ||||| || |||||| || |||||||| || || || || | || || ||||| Sbjct 167685 TGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCAA-AAGGGTGCGACCATCTTCGAGCTG 167743 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 |||||| | | || | |||||||||||| || | | |||||||||| || || Sbjct 167744 CTTACCAGCAAAGATGAGACGCTGCTGATCAGGGGGAATTCCTTCCTTGTCCTGGATCTT 167803 Query 48643 CTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCG 48700 ||||| | | || ||||| || | |||||| ||||| || || || ||||| Sbjct 167804 GGCCTTGACGTTGTCG--ATGGTGTCCGAAGACTCGACCTCGAGGGTGATCGTCTTACCC 167861 Query 48701 GTGAGAGTTTTCACAAAAATCTGCATCGTGTCT 48733 ||||| ||||| ||||| ||||||||| || || Sbjct 167862 GTGAGGGTTTTAACAAAGATCTGCATCTTGACT 167894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421238128838546