Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900101485.1_202016-11-05] 2,546 sequences; 20,775,628 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq933 143 4e-30 >seq933 Length=180210 Score = 143 bits (158), Expect = 4e-30 Identities = 180/246 (73%), Gaps = 1/246 (0%) Strand=Plus/Minus Query 16447 CAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCG 16506 ||||||| | ||||| |||||||| || ||||||||||| |||||||| ||||| || || Sbjct 57356 CAGATCT-TGCGAGACAACATCCAGGGTATCACCAAGCCCGCTATCCGACGTCTCGCGCG 57298 Query 16507 TCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAA 16566 |||||||| || |||||| ||||||| | |||| || |||| |||| ||| | || Sbjct 57297 CCGTGGTGGTGTTAAGCGTATCTCTGGGCTTATCTACGACGAGACCCGTGGTGTCCTCAA 57238 Query 16567 GATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAA 16626 | ||||||| || | ||||||| || | || || || ||||| || || || || Sbjct 57237 GCTCTTCCTTGAGTCGGTTATCCGCGACTCGGTCACTTACACTGAGCATGCCAAGCGCAA 57178 Query 16627 GACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGG 16686 ||| |||||||| | || | ||||| || | || || || ||||| | | || || Sbjct 57177 GACCGTCACCTCGCTCGACGTTGTCTACGCTCTTAAGCGCCAGGGCCGAACCCTCTACGG 57118 Query 16687 TTTTGG 16692 ||| || Sbjct 57117 TTTCGG 57112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79072872174378