Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900101485.1_202016-11-05] 2,546 sequences; 20,775,628 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq1109 152 6e-32 seq1432 122 1e-22 >seq1109 Length=147467 Score = 152 bits (168), Expect = 6e-32 Identities = 442/678 (65%), Gaps = 2/678 (0%) Strand=Plus/Plus Query 63183 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 63242 || ||||| | |||||| || || | | || || | ||||| |||||||| || | | Sbjct 96963 GGGCACATGAGCGACCAATCGCCATTCTGCTCGACCCTCTTCATGAAGAGATCGGGGACC 97022 Query 63243 CAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGA 63302 |||||||| || || || | || | | |||||| || || ||||| | Sbjct 97023 CAAAGAGCGTAGAAGAGCTCACGGGCACGAACTTCCTCCTTACCGTGGTTCTTGCGCAAG 97082 Query 63303 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGC 63362 ||||||||| | | | ||| || ||||| || || | ||| || || | | ||||| Sbjct 97083 TCGAGGAACTCGAAGACATCCGAGTGCCAAGGCTCAATGTAGATAGCAAAGGCACCAGGA 97142 Query 63363 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 63422 || ||||| || || || || | ||| | ||| ||||| || | || | | ||| || Sbjct 97143 CGCTTGTTACCACCTTGGTCGACGTAACGAGCAGTGTTGTTGAAGACACGGAGCATGGGC 97202 Query 63423 ATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTA 63482 | |||||||| | ||| |||||||||| || || || | ||||||| | Sbjct 97203 ACGATACCGTTGCTGACACCGTTGGTACCGGCAATGTAAGAGCCGGTACCACGAATGC-A 97261 Query 63483 CTAATTGAT-AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGT 63541 | || | ||||| || || || || | || ||||| | || || || | || Sbjct 97262 GTGGATGTTGAGACCGATACCACCGGCGGTCTTGGAGATCATGGCACAGGTCTTGAGGGT 97321 Query 63542 GTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTG 63601 ||| ||||| || || || ||||| ||||| | | || ||||| || | || Sbjct 97322 GTCGTAGATCCCGTCGATCGAGTCATCCTTCATGGTGACAAGGAAACACGACGAGAGCTG 97381 Query 63602 GTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA 63661 | | || || || || || | || || || || || ||||| | |||| || Sbjct 97382 AGGGTGGGGGGTACCGGCGTTGAAGAGCGTTGGCGAGGCATGAGTAAAGTACTTTTGCGA 97441 Query 63662 AAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGAC 63721 | || ||||||||||||||||| || || ||| ||||| || || ||||| Sbjct 97442 CATGAGGTTGTACGTCTCAATAGCACTCTCAATGTCCTGGCCGTGAATACCGACAGCGAC 97501 Query 63722 ACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGA 63781 |||||| | ||||||||| || | ||| ||| |||| ||| || | ||||||||| Sbjct 97502 ACGCATGATCATGTGCTGGGGACGCTCAGCGACCTTGCCGTTGATACGGAGCAAGTAGGA 97561 Query 63782 TTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAAC 63841 | || | || || ||||| || ||||||| ||||| || ||||| || || | Sbjct 97562 TCGCTCGAGGGTCTTGAAACCGAAGAAGTTGTAGTGGAAGTCGCGCTCGTAGATGATGGC 97621 Query 63842 CGAGTTGAGTTTATCCtt 63859 ||||| ||| | ||||| Sbjct 97622 CGAGTCGAGCTGGTCCTT 97639 >seq1432 Length=176812 Score = 122 bits (134), Expect = 1e-22 Identities = 175/246 (71%), Gaps = 3/246 (1%) Strand=Plus/Minus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || || |||||| ||| ||||||||||| | | || || |||||||| || ||||| Sbjct 172892 CAGGCAAAATCGGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTGAGA 172833 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 |||||||| || || ||||| || ||||| || || || || || || || || |||||| Sbjct 172832 CCGGGCATGAGACCGCGCTTCTTGAGCCAGAAGATCGAGGCAAAGGAGCCTGAGAAGAAG 172773 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGC---GCTGTCATGT 33480 || ||||| || || |||||||||| || | ||| | | ||| || ||| | Sbjct 172772 ATACCTTCGACGGCGGCAAAGGCAACGAGACGCTCAGCGAAGGTGGCCTTGCGGTCGTTG 172713 Query 33481 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33540 ||||| | ||||| ||||||||||| || || || || || || | ||| | | Sbjct 172712 ATCCATCGAAGGGCCCATTCGGCCTTCTTCTTGACGACGGGGATAGTCTCGACGGCGTCA 172653 Query 33541 AAGAGA 33546 |||||| Sbjct 172652 AAGAGA 172647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622927374705360