Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900101485.1_202016-11-05] 2,546 sequences; 20,775,628 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq1109 320 4e-82 seq1432 93.3 1e-13 >seq1109 Length=147467 Score = 320 bits (354), Expect = 4e-82 Identities = 1168/1800 (65%), Gaps = 54/1800 (3%) Strand=Plus/Minus Query 363391 TTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGTATCAATGGTGATATTGTTGAA 363450 ||||| | ||||| | ||| ||||||| | |||||||| || | | | ||| Sbjct 97585 TTCGGTTTCAAGACCCTCGAGCGATCCTACTTGCTCCGTATCAACGGCAAGGTCGCTGAG 97526 Query 363451 CGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATGCC 363510 || || ||||| ||| | |||||||| ||| | ||||| || ||| ||| |||| Sbjct 97525 CGTCCCCAGCACATGATCATGCGTGTCGCTGTCGGTATTCACGGCCAGGACATTGAGAGT 97466 Query 363511 GCGATTGAAACATATAAGCTTCTAAGT-GCTCGTGTA-TTCACGCACGCCACGCCAACAA 363568 || ||||| || || || || | || || ||| || || || ||| ||||||| Sbjct 97465 GCTATTGAGACGTACAACCTCAT--GTCGCAAAAGTACTTTACTCATGCCTCGCCAACGC 97408 Query 363569 TGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGG 363628 | | ||| || || || | | || ||| | || || || || ||| | | ||||||| Sbjct 97407 TCTTCAACGCCGGTACCCCCCACCCTCAGCTCTCGTCGTGTTTCCTTGTCACCATGAAGG 97348 Query 363629 ACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATG 363688 | || || ||||| || |||| ||||| || |||| ||||| | || ||||||| | Sbjct 97347 ATGACTCGATCGACGGGATCTACGACACCCTCAAGACCTGTGCCATGATCTCCAAGACCG 97288 Query 363689 CAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGTTACATTCGCGGC 363747 | || || || ||| | |||||| |||||| || | | ||||||| ||| Sbjct 97287 CCGGTGGTATCGGTCTCAACATCCACTGCATTCGTGGTACCGG-CTCTTACATTGCCGGT 97229 Query 363748 ACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGG 363807 || || | || || | || |||||||| ||||| || |||| ||||| | Sbjct 97228 ACCAACGGTGTCAGCAACGGTATCGTGCCCATGCTCCGTGTCTTCAACAACACTGCTCGT 97169 Query 363808 TACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCAT 363867 ||||||||||| ||||| ||||| || || |||||||| || | |||||| Sbjct 97168 TACGTCGACCAAGGTGGTAACAAGCGTCCTGGTGCCTTTGCTATCTACATTGAGCCTTGG 97109 Query 363868 CATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGT 363927 || | ||| | || ||||| || || | || || ||| || || |||||| | ||| Sbjct 97108 CACTCGGATGTCTTCGAGTTCCTCGACTTGCGCAAGAACCACGGTAAGGAGGAAGTTCGT 97049 Query 363928 GCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCA 363987 || ||||| || ||||| || |||||||| | || | || |||||| | || || ||| Sbjct 97048 GCCCGTGAGCTCTTCTACGCTCTTTGGGTCCCCGATCTCTTCATGAAGAGGGTCGA-GCA 96990 Query 363988 G-GTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGGGG 364046 | | ||||||| ||| | ||||| |||| || || || ||| |||| | || Sbjct 96989 GAATGGCGATTGGTCGCTCATGTGCCCTAACGAGTGCCCCGGCCTTGCCGACTGCTACGG 96930 Query 364047 TGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAG---AC 364103 |||||| | || ||| ||||| || || | ||||| | ||| ||||| || Sbjct 96929 TGACGAGTTTGAGCGTCTCTACGAGCGCTACGAGGCTGAGGG--ACGCT-GTAAGCGAAC 96873 Query 364104 AATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACC 364163 | || |||||||| |||| |||||| | || || |||| ||||| || | || Sbjct 96872 CGTCAAGGCCCAGAAGCTCTGGTACGCCATCCTCGAGTCTCAGACCGAGACCGGTAATCC 96813 Query 364164 CTATATGTTGTACAAAGATTCGTGC-AACCGCAAGTCCAACCAGCAGCACCTTGGTACAA 364222 | || | ||||| || | ||| |||||||||||||||||| || |||| ||||| | Sbjct 96812 TTTCATCCTCTACAAGGACGC-TGCTAACCGCAAGTCCAACCAGAAGAACCTCGGTACCA 96754 Query 364223 TTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCG 364282 | || |||||| || ||||| || || || ||| | || ||||| ||| || | Sbjct 96753 TCAAGTGCTCCAACCTCTGCACCGAAATCATCGAGTACTCTGCCCCCGATGAGGTCGCTG 96694 Query 364283 TATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAAAGATGGTAC------TTTTG 364336 | || ||| | || || ||||| || || | || | | || ||| | | Sbjct 96693 TCTGCAACTTGGCCTCCATCGCCCTCCCCACCTTCATCGACCCTGTTACCAAGGTCTACG 96634 Query 364337 ACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTGCA--ATCTCG-ACAAGGTTA 364393 | | ||| ||| |||| || || | || | |||| | || | ||||| | | Sbjct 96633 ATTTCAAGCGTCTGCATGAGGTCGCC---AAAGCCATCTGCAAGAACTTGAACAAGATCA 96577 Query 364394 TCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGTTCTAATATGCGTCATCGCCCGA 364453 |||||| || || || || || ||||| || || || |||||||| || || | Sbjct 96576 TCGACATCAACTACTACCCCGTTGAAGAAGCTCGTCGATCCAACATGCGTCACCGTCCCA 96517 Query 364454 TTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAG----ATGGCATTT 364509 | ||| | ||||| ||||| ||||| || | || |||| ||| | || || || Sbjct 96516 TCGGTATCGGTGTTCAGGGTCTCGCCGATGCATTCATGA---TCATGGGTTAT-GCCTTC 96461 Query 364510 GATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCA 364569 || || ||||| || ||| | | || | ||||||| || || || ||| ||||| Sbjct 96460 GAGTCCCCTGAGGCGCGTCGTTTGAACGTGCAGATCTTCGAGACCATCTATCACGCCGCT 96401 Query 364570 AT-GACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAGGGGTC 364628 | || | ||||| || ||||| | | || | ||| || || | || || Sbjct 96400 CTCGAGCG-ATCGTGCGAGTTGGCTCAGGAGCACGGCACCTACGAGACATACCAAGGTTC 96342 Query 364629 CCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCTGTCCGATG 364688 || ||| |||||| || | |||| ||| | ||| ||||| || || | || || Sbjct 96341 GCCCGCTTCCCAGGGAGAACTTCAGTATGACATGTGGGGCGTCACTCCCTCCGACCTCTG 96282 Query 364689 GAACTGGGATACGCTACGTTCCAACGTTAAGAAGCATGGTACTCGCAACTCCCTCGTTAC 364748 | |||||| | |||| | || || ||||| ||| ||| ||||| ||| | Sbjct 96281 GGACTGGGCTTCGCTCAAGGCTAAGATTGCCAAGCACGGTCTTCGTAACTCACTCTTGTT 96222 Query 364749 AGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACC 364808 || ||||||||||| ||||| || |||||| | || ||||||||||||||| || Sbjct 96221 GGCACCCATGCCCACTGCTTCGACCAGTCAGATCTTGGGCTTCAACGAGTGCTTCGAGCC 96162 Query 364809 GTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAA 364868 | || || |||| || || || || ||| | || ||||| | ||| || || Sbjct 96161 CTACACTTCGAACATTTACTCTCGTCGTGTACTTGCTGGTGAATTCCAGGTCGTCAACCC 96102 Query 364869 GTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACTATAT 364928 | | || || | ||| | | || ||| |||| ||||| ||| || Sbjct 96101 CTGGTTGCTCCGCGAGTTGGTCGAACAGAGACTTTGGAACGACACAATGAAAAACCGAAT 96042 Query 364929 CATCGC---CGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTGAAGCC 364985 |||||| ||| || || | || ||| | || || | || || | | ||| Sbjct 96041 CATCGCTCACGC---CGGCTCCATCCAAAACGTCCCCGGTATCCCCGACCGTATCAAGAA 95985 Query 364986 TATTTACAAAACCGTATGGGAAATTTC-CATGCGAA--CTCTCATTGATATGGCGGCCGA 365042 | ||||| || || ||||| || || || ||| | |||| || ||||| ||||| Sbjct 95984 GCTCTACAAGACTGTCTGGGAGATCTCGCA---GAAGGCCATCATCGACATGGCCGCCGA 95928 Query 365043 TCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCA--TGACTCAGCCAACC 365100 ||| |||||||| || || ||| |||||| | || ||| || || | || || Sbjct 95927 TCGAGGTGCTTTCATTTGCCAGTCGCAGTCGCTCAA--TATCCACCTGTCCGCTCCTACG 95870 Query 365101 TCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGGTGCC 365160 | || |||| || || ||||| |||||||| ||||| ||||| ||||| ||| || Sbjct 95869 TTCGGTCAGCTCACCTCGATGCACTTCTACGGCTGGAAGAAGGGTCTCAAGACGGGTACC 95810 >seq1432 Length=176812 Score = 93.3 bits (102), Expect = 1e-13 Identities = 149/212 (70%), Gaps = 3/212 (1%) Strand=Plus/Plus Query 22435 AAGAATAAGGCAGATTGGGCGCTGAAATGGATGAACAAT-GAACGTTCA--TTCGCGGAA 22491 ||||| ||||| || ||||| || |||||| ||| | | | | || ||||| || Sbjct 172681 AAGAAGAAGGCCGAATGGGCCCTTCGATGGATCAACGACCGCAAGGCCACCTTCGCTGAG 172740 Query 22492 CGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATC 22551 ||||| |||| ||||| | || ||||| || ||||| || || | ||| | ||| Sbjct 172741 CGTCTCGTTGCCTTTGCCGCCGTCGAAGGTATCTTCTTCTCAGGCTCCTTTGCCTCGATC 172800 Query 22552 TTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGC 22611 || ||||| || || || | | ||||| ||||| || || || || ||| | || Sbjct 172801 TTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGTCTCACCTTCTCCAACGAGCTCATCTCT 172860 Query 22612 CGAGATGAGGGTCTTCATACCGATTTTGCGTG 22643 || || ||||||||||| ||||||||||| || Sbjct 172861 CGTGACGAGGGTCTTCACACCGATTTTGCCTG 172892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303311083790972