Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900101485.1_202016-11-05] 2,546 sequences; 20,775,628 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq1109 168 6e-37 seq998 116 3e-21 seq1042 93.3 4e-14 seq2517 84.2 2e-11 >seq1109 Length=147467 Score = 168 bits (186), Expect = 6e-37 Identities = 928/1451 (64%), Gaps = 45/1451 (3%) Strand=Plus/Plus Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117 ||||||||||| || || || || | |||||||| | || | ||| || ||| |||| Sbjct 96105 TTGACGACCTGGAATTCACCAGCAAGTACACGACGAGAGTAAATGTTCGAAGTGTAGGGC 96164 Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177 || || ||||||| ||||| ||| ||| ||||| || ||||||||| |||| | Sbjct 96165 TCGAAGCACTCGTTGAAGCCCAAGATCTGACTGGTCGAAGCAGTGGGCATGGGTGCCAAC 96224 Query 145178 AATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCAT 145237 || | ||| || || || |||||||| || | |||| |||| | |||| ||||| Sbjct 96225 AAGAGTGAGTTACGAAGACCGTGCTTGGCAATCTTAGCCTTGAGCGAAGCCCAGTCCCAG 96284 Query 145238 AG--CGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGGC 145295 || || || || | ||| |||||||||| ||||| | |||| | ||||| Sbjct 96285 AGGTCGGAG--GGAGTGACGCCCCACATGTCATACTGAAGTTCTCCCTGGGAAGCGGGCG 96342 Query 145296 TGCCTTGAAAGGAACTGTAACTGCCCCAAGTTTTGGCGAGCTCGCA-ACTCGCCTCCAGA 145354 ||||| | | ||| |||| | || | |||||| ||| ||| ||| Sbjct 96343 AACCTTGGTATGTCTCGTAGGTGCCGTGCTCCTGAGCCAACTCGCACGATCG-CTCGAGA 96401 Query 145355 GCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCTCG 145414 ||| || ||| || |||||| || ||| ||| | | ||| ||| | |||| Sbjct 96402 GCGGCGTGATAGATGGTCTCGAAGATCTGCACGTTCAAACGACGCGCCTCAGGGGACTCG 96461 Query 145415 TACGGCAT-GCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGGG 145473 | ||||| | || | | || ||||||||||| ||||| | || | |||||||| Sbjct 96462 -AAGGCATAACCCATGATCATGAATGCATCGGCGAGACCCTGAACACCGATACCGATGGG 96520 Query 145474 CCGATGTTTCATGTT-GCTC----ATCCTCGCCGACTCGATAGGATATCGATTACGGTCG 145528 || || |||||| | || | | || | || | ||| | | ||| |||| Sbjct 96521 ACGGTGACGCATGTTGGATCGACGAGCTTCTTCAACGGGGTAGTA-GTTGAT----GTCG 96575 Query 145529 ATAATTTTATTCAAGTT-TCGCACTACTACCTTTGTAATGTGCCGCA-ACTTTTCAAAGT 145586 || || || |||||||| | ||| | | || | | | ||| || || ||| | Sbjct 96576 ATGATCTTGTTCAAGTTCTTGCA-GATGGCTTTGGCGACCTCATGCAGACGCTTGAAA-T 96633 Query 145587 CAAACCGAGCCTCGT--CAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACA 145644 | | || | | || || | | | || | || |||||| || ||||| || || Sbjct 96634 CGTA--GACCTTGGTAACAGGGTCGATGAAGGTGGGGAGGGCGATGGAGGCCAAGTTGCA 96691 Query 145645 AACTGCCGTCTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTACATTT 145704 || || ||| |||| | | ||| | | ||| |||| ||| | ||| || || Sbjct 96692 GACAGCGACCTCATCGGGGGCAGAGTACTCGATGATTTCGGTGCAGAGGTTGGAGCACTT 96751 Query 145705 GATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTT-GCACGCGTCCTTGTAGAGCATGT 145763 |||||| || || || | ||| || || | ||| ||| |||||||||||||| ||| Sbjct 96752 GATGGTACCGAGGTTCTTCTGGTTGGACTTGCGGTTAGCA-GCGTCCTTGTAGAGGATGA 96810 Query 145764 ACGGTCCGCCAGTCTCCACCTGCGTCTCCACGATAAAACGGTGCA-AG-TCCTGCGCACG 145821 | || || ||||| ||| | ||| | ||| || || || | ||| || Sbjct 96811 AAGGATTACCGGTCTCGGTCTGAGACTCGAGGAT--GGCGTACCAGAGCTTCTGGGCCTT 96868 Query 145822 CACCTGCTGCTGGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGGA 145881 || ||| |||| ||||| | ||||| | |||||| ||||||| || Sbjct 96869 GACGGTTCGCTTACAGCGTCCCTCAGCCTCGTAGCGCTCGTAGAGACGCTCAAACTCGTC 96928 Query 145882 ACCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTT 145941 ||||||||| |||| |||||||| |||| ||| || ||||| |||||||| |||| || Sbjct 96929 ACCGTAGCAGTCGGCAAGGCCGGGGCACTCGTTAGGGCACATGAGCGACCAATCGCCATT 96988 Query 145942 GGCGTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGCGCGC 146001 | ||| | || ||| || | ||| || ||||| || ||||| | | || || || Sbjct 96989 CTGCTCGACCCTCTTCATGAAGAGATCGGGGACCCAAAGAGCGTAGAAGAGCTCACGGGC 97048 Query 146002 TTTGCAATCCTCAGCACCCATGTT-TCGCTTCAAATTAAGCACACT-ATAGATGTCCGCG 146059 ||||| ||| ||| | || ||| | || | ||| ||| |||| | Sbjct 97049 ACGAACTTCCTCCTTACCGTGGTTCTTGC-GCAAGTCGAGGA-ACTCGAAGACATCCGAG 97106 Query 146060 TGCCACGGTTCAATATAGACGGCGAGGGCTCCTTTTCGTTTG---CCACCCTGGTCCACG 146116 ||||| || ||||| |||| || | ||| || || ||| ||||| ||||| ||| Sbjct 97107 TGCCAAGGCTCAATGTAGATAGCAAAGGCACCAGGACGCTTGTTACCACCTTGGTCGACG 97166 Query 146117 TGACGTACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTACGCCGTTC 146176 | ||| | ||||||| ||||| || | ||||||| ||| ||| || || ||||| Sbjct 97167 TAACGAGCAGTGTTGTTGAAGACACGGAGCATGGGCACGATACCGTTGCTGACACCGTTG 97226 Query 146177 GTAGAGTTTATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGCCGAGACCGCCG 146236 ||| | || | |||| || | ||| || | || | |||| ||| ||| Sbjct 97227 GTACCGGCAATGTAAGAGCCGGTACCACGAATGCAGTGGATGTTGAGACCGATACCACCG 97286 Query 146237 CCGTACTTGGATATAGCGGCGCAGTCGCCGAGCGTCTCGTAGATGCCGTCAAT---GCTA 146293 || |||||| || ||| ||| ||| || |||||||| ||||| || | | Sbjct 97287 GCGGTCTTGGAGATCATGGCACAGGTCTTGAGGGTGTCGTAGATCCCGTCGATCGAGTCA 97346 Query 146294 TCGCTTCGAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGGCGTCCCCGCCGAG 146353 || |||| ||| || || || ||||| | | ||| | || || || || | Sbjct 97347 TC-CTTC--ATGGTGACAAGGAAACACGACGAGAGCTGAGGGTGGGGGGTACCGGCGTTG 97403 Query 146354 AACAACGTCGGGCTCGCGTGCGTAAACATTTTTCGGCTCATCATCCGATACGTTTCGATA 146413 || | ||| || || || ||||| ||| | ||| | ||||| || ||| Sbjct 97404 AAGAGCGTTGGCGAGGCATGAGTAAAGTACTTTTGCGACATGAGGTTGTACGTCTCAATA 97463 Query 146414 GCGTCTTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCATGAGCATGTGTTGGGGC 146473 || | |||||| | ||| ||||| || | |||||| ||||||| |||||| ||||| Sbjct 97464 GCACTCTCAATGTCCTGGCCGTGAATACCGACAGCGACACGCATGATCATGTGCTGGGGA 97523 Query 146474 CGCTCCGCCAC 146484 ||||| || || Sbjct 97524 CGCTCAGCGAC 97534 >seq998 Length=480981 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | || || || | ||| | ||| |||||||| |||||||||||||| Sbjct 89112 CCACCACGGAGGCGGAGAACGAGATGAAGGGTGGACTCCTTCTGAATGTTGTAATCCGAG 89053 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || ||||| ||||||||||| ||| |||| | ||||||||| || || || Sbjct 89052 AGGGTACGGCCATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGA 88993 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| || ||||| | || | || || | | ||||| Sbjct 88992 ATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTGTCAATGGTGTCCGAAGGCTCGACC 88933 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||| | ||| || ||||| || || || || || |||||||| Sbjct 88932 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 88886 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | ||| | ||||||||||| || |||||||| ||| Sbjct 89340 CCACCACGAAGACGGAGGACAAGATGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGAG 89281 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| || || ||||||||||| || |||| | ||||||||| || || || Sbjct 89280 AGGGTGCGGCCATCTTCAAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGATCAGGGGGA 89221 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| || || ||||| | || | || || | |||||||| Sbjct 89220 ATACCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATGGTGTCAGAGGACTCGACC 89161 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| || ||||| | ||| || ||||| |||||||| Sbjct 89160 TCAAGAGTGATGGTCTTGCCGGTCAAAGTCTTGACGAAGATCTGCAT 89114 >seq1042 Length=313568 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | || | ||| |||||||| || ||| |||| || Sbjct 114702 CCACCACGGAGACGGAGGACAAGGTGAAGGGTGGACTCCTTCTGGATGCTGTAGTCCGAG 114643 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| |||||| |||||||| || || |||| | |||||||||||| || ||| Sbjct 114642 AGGGTGCGGCCGTCCTCGAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCGGGGGGG 114583 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | || |||| ||||| | Sbjct 114582 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 114523 Query 131188 TCGACGGTAACGGTTTTACCGGTT 131211 || | ||| | ||| ||||| ||| Sbjct 114522 TCAAGGGTGATGGTCTTACCTGTT 114499 >seq2517 Length=173 Score = 84.2 bits (92), Expect = 2e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 131043 CTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTA 131102 |||||| ||||||||||| ||| | ||||| |||||| || ||||| || || | Sbjct 162 CTCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCGAGTTGCTTACCAGCAAA 103 Query 131103 GATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTG 131162 ||| || ||||||||||| ||||| || ||||| ||||| ||| || ||||| | Sbjct 102 GATCAATCGCTGCTGGTCAGGAGGAATACCTTCCTTGTCCTGGATCTTGGCCTTGACATT 43 Query 131163 CTCCACAGTATCGGTGGACTCGATGTCGA 131191 || | || || | |||||||| |||| Sbjct 42 GTCGATGGTGTCCGAGGACTCGACTTCGA 14 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471997778192640