Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900101485.1_202016-11-05] 2,546 sequences; 20,775,628 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq462 140 2e-28 seq1016 136 3e-27 seq134 132 3e-26 seq2049 104 2e-17 seq418 98.7 7e-16 seq384 98.7 7e-16 seq1805 91.5 1e-13 seq475 91.5 1e-13 seq1944 87.8 1e-12 >seq462 Length=183 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 1 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 60 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 61 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 95 >seq1016 Length=183 Score = 136 bits (150), Expect = 3e-27 Identities = 87/95 (92%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 1 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 60 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||| ||| Sbjct 61 TAATCCATTCATGCGCGTCACTAATTAGATGCCGA 95 >seq134 Length=318 Score = 132 bits (146), Expect = 3e-26 Identities = 84/91 (92%), Gaps = 5/91 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 91 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 32 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATG 25987 |||||| |||||||||||||||||||||||| Sbjct 31 TAATCCATTCATGCGCGTCACTAATTAGATG 1 >seq2049 Length=127 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||||||||||| |||||| |||| |||||||||||||||||||||| | Sbjct 100 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCATCACTGTACTTGTTCGCTATCGGTCTCTC 41 Query 20007 GGTAATATTTAGCCTTA 20023 |||||||||||||| Sbjct 40 CCCAATATTTAGCCTTA 24 >seq418 Length=183 Score = 98.7 bits (108), Expect = 7e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||||||||||| |||||| || | |||||||||||||||||||||| | Sbjct 125 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCATCTCTGTACTTGTTCGCTATCGGTCTCTC 66 Query 20007 GGTAATATTTAGCCTTA 20023 |||||||||||||| Sbjct 65 CCCAATATTTAGCCTTA 49 >seq384 Length=183 Score = 98.7 bits (108), Expect = 7e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||||||||||| |||||| |||| |||||||||||||||||||||| | Sbjct 28 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCATCACTGTACTTGTTCGCTATCGGTCTCTC 87 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 88 CCCACTATTTAGCCTTA 104 >seq1805 Length=116 Score = 91.5 bits (100), Expect = 1e-13 Identities = 61/68 (90%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 19956 CAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGTAATATT 20015 |||||||||||||| |||||| |||| |||||||||||||||||||||| | |||||| Sbjct 1 CAAAGTTCTTTTCATCTTTCCATCACTGTACTTGTTCGCTATCGGTCTCTCCCCAATATT 60 Query 20016 TAGCCTTA 20023 |||||||| Sbjct 61 TAGCCTTA 68 >seq475 Length=183 Score = 91.5 bits (100), Expect = 1e-13 Identities = 61/68 (90%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 19956 CAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGTAATATT 20015 |||||||||||||| |||||| |||| |||||||||||||||||||||| | |||||| Sbjct 1 CAAAGTTCTTTTCATCTTTCCATCACTGTACTTGTTCGCTATCGGTCTCTCCCCAATATT 60 Query 20016 TAGCCTTA 20023 |||||||| Sbjct 61 TAGCCTTA 68 >seq1944 Length=122 Score = 87.8 bits (96), Expect = 1e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTC 20004 |||||| |||||||||||||||| |||||| |||| |||||||||||||||||||||| Sbjct 59 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCATCACTGTACTTGTTCGCTATCGGTCTC 116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334936806797726