Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900101485.1_202016-11-05] 2,546 sequences; 20,775,628 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq1109 143 3e-29 seq1432 118 1e-21 >seq1109 Length=147467 Score = 143 bits (158), Expect = 3e-29 Identities = 451/696 (65%), Gaps = 2/696 (0%) Strand=Plus/Plus Query 63020 AGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTC 63079 || || || || || | || ||||| | |||||| || || | | || || | ||| Sbjct 96945 AGGCCGGGGCACTCGTTAGGGCACATGAGCGACCAATCGCCATTCTGCTCGACCCTCTTC 97004 Query 63080 ATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTT 63139 || |||||||| || | ||||||||| || || || | || | | |||||| || Sbjct 97005 ATGAAGAGATCGGGGACCCAAAGAGCGTAGAAGAGCTCACGGGCACGAACTTCCTCCTTA 97064 Query 63140 CCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTAT 63199 || ||||| | ||||||||| | | | ||| || ||||| || || | ||| Sbjct 97065 CCGTGGTTCTTGCGCAAGTCGAGGAACTCGAAGACATCCGAGTGCCAAGGCTCAATGTAG 97124 Query 63200 ATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTA 63259 || || | | ||||| || ||||| || || || || | ||| | ||| ||||| || Sbjct 97125 ATAGCAAAGGCACCAGGACGCTTGTTACCACCTTGGTCGACGTAACGAGCAGTGTTGTTG 97184 Query 63260 TAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTT 63319 | || | | ||| || | ||||| ||| ||| ||||| || | || || Sbjct 97185 AAGACACGGAGCATGGGCACGATACCGTTGCTGACACCGTTGGTACCGGCAATGTAAGAG 97244 Query 63320 CCACTGGCACGAATATTACTAATTGAT-AGACCTATTCCCCCTGCCATTTTAGAGATTAA 63378 || | ||||||| | | || | ||||| || || || || | || ||||| | Sbjct 97245 CCGGTACCACGAATGC-AGTGGATGTTGAGACCGATACCACCGGCGGTCTTGGAGATCAT 97303 Query 63379 TGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAG 63438 || || || | || || ||||| || || || |||||| ||||| | | || Sbjct 97304 GGCACAGGTCTTGAGGGTGTCGTAGATCCCGTCGATCGAGTCATCCTTCATGGTGACAAG 97363 Query 63439 AAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTG 63498 ||||| || | || | | || || || || || | || || || || || Sbjct 97364 GAAACACGACGAGAGCTGAGGGTGGGGGGTACCGGCGTTGAAGAGCGTTGGCGAGGCATG 97423 Query 63499 AGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTG 63558 |||||| | |||| || | || ||||||||||||||||| || || ||| Sbjct 97424 AGTAAAGTACTTTTGCGACATGAGGTTGTACGTCTCAATAGCACTCTCAATGTCCTGGCC 97483 Query 63559 ATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTT 63618 ||||| || || ||||||||||| | ||||||||| || | ||| ||| |||| ||| Sbjct 97484 GTGAATACCGACAGCGACACGCATGATCATGTGCTGGGGACGCTCAGCGACCTTGCCGTT 97543 Query 63619 TATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 63678 || | |||||||||| || | || || ||||| || ||||||| ||||| Sbjct 97544 GATACGGAGCAAGTAGGATCGCTCGAGGGTCTTGAAACCGAAGAAGTTGTAGTGGAAGTC 97603 Query 63679 TCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTT 63714 || ||||| || || |||||| ||| | ||||| Sbjct 97604 GCGCTCGTAGATGATGGCCGAGTCGAGCTGGTCCTT 97639 >seq1432 Length=176812 Score = 118 bits (130), Expect = 1e-21 Identities = 174/246 (71%), Gaps = 3/246 (1%) Strand=Plus/Minus Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720 || || |||||| ||| ||||||||||| | | || | |||||||| || ||||| Sbjct 172892 CAGGCAAAATCGGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTGAGA 172833 Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 32780 |||||||| || || ||||| || ||||| || || || ||||| || || || ||||| Sbjct 172832 CCGGGCATGAGACCGCGCTTCTTGAGCCAGAAGATCGAGGCAAAGGAGCCTGAGAAGAAG 172773 Query 32781 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC---GCTGTCATGT 32837 || ||||| || || |||||||||| || | ||| | | ||| || ||| | Sbjct 172772 ATACCTTCGACGGCGGCAAAGGCAACGAGACGCTCAGCGAAGGTGGCCTTGCGGTCGTTG 172713 Query 32838 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTA 32897 ||||| | ||||| ||||||||||| || || || || ||||| | || | | Sbjct 172712 ATCCATCGAAGGGCCCATTCGGCCTTCTTCTTGACGACGGGGATAGTCTCGACGGCGTCA 172653 Query 32898 AAGAGA 32903 |||||| Sbjct 172652 AAGAGA 172647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633611834661600