Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900101485.1_202016-11-05] 2,546 sequences; 20,775,628 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq998 140 3e-28 seq1042 109 5e-19 seq2517 87.8 2e-12 >seq998 Length=480981 Score = 140 bits (154), Expect = 3e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || ||||| ||||| || || |||||||||| || || || | Sbjct 89114 ATGCAGATCTTCGTCAAGACTTTGACCGGCAAGACCATCACTCTTGAGGTCGAGTCCTCT 89173 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | |||| || ||||| ||||||||||||||||| || ||||| Sbjct 89174 GACACCATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGTATTCCCCCTGATCAG 89233 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || ||||| ||||| ||| | || ||| ||||||| ||||||| |||||| Sbjct 89234 CAGCGTCTCATCTTTGCTGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCCGACTACAAC 89293 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || || || Sbjct 89294 ATCCAGAAGGAGTCGAC 89310 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||||| || ||||| || || | ||||| || || |||| || || || || | Sbjct 88884 AGATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGCCTT 88943 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 | || ||| | ||| || |||| || || || |||||||| || ||||| || |||| Sbjct 88944 CGGACACCATTGACAATGTCAAGGCTAAGATCCAGGACAAGGAAGGCATTCCCCCTGATC 89003 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | || ||||| || || || ||||| ||| | |||||| ||| ||| |||| ||||||| Sbjct 89004 AGCAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGTACCCTCTCGGATTACA 89063 Query 22397 ACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||||| || || |||||| | ||| | ||| | || | || || ||| Sbjct 89064 ACATTCAGAAGGAGTCCACCCTTCATCTCGTTCTCCGCCTCCGTGGTGGT 89113 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 22213 GTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAA 22272 || |||||||| || ||||||||||| | || ||||| ||| |||| || || || || Sbjct 167893 GTCAAGATGCAGATCTTTGTTAAAACCCTCACGGGTAAGACGATCACCCTCGAGGTCGAG 167834 Query 22273 ACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCC 22332 | | || ||| | ||| | |||| || || || |||||||| || ||||| || Sbjct 167833 TCTTCGGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCT 167774 Query 22333 GATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGAT 22392 ||||| || ||||| || ||||| || || ||| | || ||| |||||| | | || Sbjct 167773 GATCAGCAGCGTCTCATCTTTGCTGGTAAGCAGCTCGAAGATGGTCGCACCCTTTTGGAC 167714 Query 22393 TACAACATTCAAAAAGAATCCACC 22416 |||||||| || || || || ||| Sbjct 167713 TACAACATCCAGAAGGAGTCTACC 167690 >seq1042 Length=313568 Score = 109 bits (120), Expect = 5e-19 Identities = 129/175 (74%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 22242 AACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACA 22301 ||| ||||| || |||| ||||| ||||| | |||| ||| | ||| | |||| Sbjct 114499 AACAGGTAAGACCATCACCCTTGAGGTGGAGTCTTCCGACACCATCGACAACGTCAAGGC 114558 Query 22302 AAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAA 22361 || || || |||||||||||||| || ||||| || || ||||| || ||||| || || Sbjct 114559 CAAGATCCAGGACAAGGAGGGTATCCCCCCCGACCAGCAGCGTCTCATCTTTGCTGGTAA 114618 Query 22362 ACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACC 22416 ||| | ||||| ||||||| |||| || |||| ||| || || || |||||| Sbjct 114619 GCAGCTCGAGGACGGCCGCACCCTCTCGGACTACAGCATCCAGAAGGAGTCCACC 114673 >seq2517 Length=173 Score = 87.8 bits (96), Expect = 2e-12 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 22249 AAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAAATT 22308 || ||| ||||||| ||||| || || | || ||| | ||| || |||| || || Sbjct 1 AAGACGATCACTCTCGAAGTCGAGTCCTCGGACACCATCGACAATGTCAAGGCCAAGATC 60 Query 22309 CAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTA 22368 || |||||||| |||||||| || || || || || | || ||||| || || || | Sbjct 61 CAGGACAAGGAAGGTATTCCTCCTGACCAGCAGCGATTGATCTTTGCTGGTAAGCAACTC 120 Query 22369 GAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGA 22409 ||||| |||||| | ||||| ||||||||||| || || Sbjct 121 GAGGACGGCCGCACTCTTTCCGACTACAACATTCAGAAGGA 161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419714976102490