Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900101485.1_202016-11-05] 2,546 sequences; 20,775,628 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq1240 183 6e-41 seq1124 102 2e-16 >seq1240 Length=316128 Score = 183 bits (202), Expect = 6e-41 Identities = 826/1290 (64%), Gaps = 37/1290 (3%) Strand=Plus/Plus Query 217836 CTGCACTCTCATCCTGACAGAGGGAGACTCAGCTGCCACGCTGGCAACCGCTGGTCTTGC 217895 ||||||||||||||| || || || ||||| || |||| || |||||||||| Sbjct 142543 CTGCACTCTCATCCTCACCGAAGGTGACTCCGCCAAGGCGCTTGCTGTGGCTGGTCTTGT 142602 Query 217896 CGTGGTGGGTCGTGAAAGGTATGGTATCTTCCCCCTCCGTGGTAAGCTGCTCAACGTGCG 217955 || |||||||||||| | || ||| | ||||| || ||||||||||| ||||| || || Sbjct 142603 CGAGGTGGGTCGTGACAATTACGGTGTTTTCCCGCTTCGTGGTAAGCTTCTCAATGTCCG 142662 Query 217956 CGATGC--CTCGGTTTCA-AGCATTGCTGCAAATGCAGAGATTGCCGCCATCAAGCAAAT 218012 || || ||| ||| | ||| | | ||||| ||||| || |||||| | || Sbjct 142663 TGAAGCGACTCACGATCAGATCAT-GAAG--AATGCCGAGATCAAAGCGATCAAGGAGAT 142719 Query 218013 CCTGGGTCTTCAGGTTGGAAAGACTTACAAGGATG-CGTCATCTCTGCGTTATGGCTCTG 218071 | | ||||| ||| || ||| ||| || | | || || |||| || ||| | Sbjct 142720 CATCGGTCTGCAGCACGGCAAGCAGTACCTCGACGTCAGCAGCT-TGCGATACGGCAGTA 142778 Query 218072 TCATGCTTATGACTGATGCTGATGTTGACGGGTCCCACATTTCCGCCCTCGTTATGAACT 218131 ||||| | ||||| ||| ||| || || || ||||| | ||| | || |||| Sbjct 142779 TCATGATCATGACCGATCAGGATCACGATGGTTCGCACATCAAGGGTCTCATCATCAACT 142838 Query 218132 TCTTCCACGCCCAGTTCCCCAGCCTCCTCGCCGTCCCAGGGTTCCTGAAGAAGTTTTCCA 218191 || || || | | |||| || ||| | || ||||| |||| || Sbjct 142839 TCCTCGACCACTTCTACCCCTCGCTGCTCAAGCTTCCTAATTTCCTCGTCGAGTTCATCA 142898 Query 218192 CTCCCATCGTGGTGGCAAGTCGTGGTAAGGATATCAATGAG------TTTTACAGTCTTC 218245 ||||||| || ||||| || |||||| || || ||| || | || ||| Sbjct 142899 CTCCCATTGT-----CAAGT-GTAGTAAGGGTAAGAAGGAGCTCTCCTTCTTCACGATTC 142952 Query 218246 CTGACTATGAGAGTTGGAAGCA---GAACA-CTGCCGACTGTGCCAAATGGTCTATCAAG 218301 | || || || ||||||| | ||||| | | || | | ||| |||||| Sbjct 142953 CCGAGTACATGACTTGGAAGGAAGCGAACAGCAACGGAAAGGGT----TGGCGCATCAAG 143008 Query 218302 TATTTCAAGGGTCTCGGAACAA-GCACATCCGAAGATGCCAAGAAGTACTTCAAGAACCT 218360 || | ||||||||||||||| | || || |||| ||||| ||||| ||| | Sbjct 143009 TACTACAAGGGTCTCGGAACCTCGGAC-TCGCAAGACGCCAAAAAGTATTTCCGTGCTAT 143067 Query 218361 CAAGTCGCTCGTGAAGATCTTTGGGTGGACCGAAGACTCTG---GCGAGCTCATCGACCG 218417 | || | || | ||||| ||| |||| || ||||||| ||||| | Sbjct 143068 GGACAAGCACATGTTGCCCTTTGATACCACCAAAGATGGTGATCGCGAGCTGATCGATCT 143127 Query 218418 ATCTTTCAACAAGTCTCGTCCTGATGAGCGCAAGACCTGGCTGCTCGACTTCCAGCCCGG 218477 ||||||||||| | || || || ||| ||||| | | |||| || || Sbjct 143128 TGCTTTCAACAAGAAGAAAGCGGACGATCGAAAGGAGTGGCTCCGTCAGTTCCGTCCTGG 143187 Query 218478 AAACCAGTTGGACCA-GTCGAAGACCAACATCCCCGTCCCTGACTTCATCGACAAGGAGC 218536 || | | | ||||| | | ||| || || ||| | | || || ||| ||||||||| Sbjct 143188 AACCTACCTCGACCACGACATCGAC-AAGATTCCCTACGCCGATTTTATCAACAAGGAGC 143246 Query 218537 TCATTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATTCCCAGCGTGGTGGATGGCCTCA 218596 |||| || |||||| | || |||||| || || | || ||||| |||| Sbjct 143247 TCATCCTCTTCTCGATGGCCGACAACATGCGTTCGATCCCGTCTGCTGTTGATGGTCTCA 143306 Query 218597 AGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCGGAACCTGGTTCAAGAAATTA 218656 ||||| ||||| ||| | |||||| | | ||||| || || | ||||| | Sbjct 143307 AGCCAGGTCAGCGAAAGGTGATCTTTGGCACGTTCAACCGCAAGGGCGACGGTGAAATCA 143366 Query 218657 AGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACCATCACGGTGAGCAGA 218716 |||| ||||| | ||| | || || | | | | |||||| |||||||| ||| Sbjct 143367 AGGTTGCTCAACTCGTCGGTCACGTGTCTGGTACCACAGCCTACCACCACGGTGAACAGT 143426 Query 218717 GTCTGCAGGGTG-CCATTGTAGGCATGGCACAGGACTATGTGGGCAGTAACAACATGAAC 218775 || || || |||| || || | |||||| | | |||||| || |||||| | ||| Sbjct 143427 CGCT-CACCATGACCATCGTTGGTCTCGCACAGAATTTTGTGGGTAGCAACAACGTTAAC 143485 Query 218776 TTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTATTGGGTGGAAAGGATAGTGCTTCT 218835 ||||| || | ||||| || ||| ||||| | | ||||| |||||| ||| || Sbjct 143486 TTGCTCGAGCCAAGGGGTCAATTCGGTACTCGTTTGCTTGGTGGTAAGGATGCTGCCTCG 143545 Query 218836 GCCAGGTATATCTTTACAAAGTTGTCGCCCGTGACGCGCCAGGTGTTCAATCAGGCCGAT 218895 ||||||||||| || || | || | | ||||| ||||| |||| ||| Sbjct 143546 GCCAGGTATATTTTCACCGCGCTGCCAAAGATCACGCGTGCCTTGTTCCCTCAGAACGAC 143605 Query 218896 GATGTGCTCCTTAAGTATCTTGAGGACGATGGTTCTTCGATTGAGCCCGAGTGGTATGTG 218955 |||| ||| ||| | || | || || ||||| || ||||| ||||||| || Sbjct 143606 GATGCGCTGCTTGAATACTTGGACGATGATGGACAGAGTATCGAGCCGCAGTGGTACATG 143665 Query 218956 CCTGCTATTCCGTTTTTGCTCGTAAATGGTGCCAATGGTATCGGGACAGGGTTCAGTACT 219015 |||| | |||| |||| | || |||||| | |||||||| || || | ||| Sbjct 143666 CCTGTTGTTCCTCAGGTGCTGCTCAACGGTGCCGAAGGTATCGGTACTGGATGGTCTACC 143725 Query 219016 GACATTCCTTCTTACAATCCCAAGGACATCATTGACAACGTCAAGCGTCTCATATCTGGC 219075 | | || |||||||| | ||||| ||| |||| | || | ||| |||| Sbjct 143726 TTCGTGCCCAACTACAATCCGCATGACATTGTTGCCAACTTGCGACGACGCATGGCTGGT 143785 Query 219076 AAGGAGATGGTACCGATGTCTCCGTGGTAC 219105 |||| | || || ||| ||||||||| Sbjct 143786 GAGGACGTCGTCCCCATGAAGCCGTGGTAC 143815 >seq1124 Length=239697 Score = 102 bits (112), Expect = 2e-16 Identities = 132/180 (73%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 280179 GGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAGGCC 280238 || ||||| ||| |||||||||| || || |||| | | |||||| ||| || || Sbjct 133152 GGCCCCAACGGTTCGGGTAAGTCGACTCTTGTCAAGCTTGTCGTTGGCGACACCGAGCCC 133211 Query 280239 A-CTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCACGC 280297 | || || | | | |||||||| |||||| || || | ||||||||| |||||||| Sbjct 133212 AACTCTGGTGAAC-TCTGGAAGCACCCCAACTTGGTCATTGGTTACGTCGCCCAGCACGC 133270 Query 280298 TTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCGCTA 280357 |||||||||||| || | ||||| |||| ||| ||| | | ||||| | ||||| || Sbjct 133271 TTTCCACCACATTGACCAGCACCTCGACAAGACCCCTCTCGACTACATGCTCTGGCGTTA 133330 Score = 84.2 bits (92), Expect = 4e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 279704 TCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCCGA 279763 ||| || |||||||||||||||||| | ||||| | || |||||||| | ||||| Sbjct 132674 TCTCTCCGGTGGTTGGAAGATGAAGGTCGCCCTTGCCCGTGCCATTCTCTTCAAGGCCGA 132733 Query 279764 TGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCTAGT 279823 | || || ||||| ||||| || |||||| ||||| | |||||| ||| | Sbjct 132734 CATTCTCCTCCTTGACGAGCCCACTAACCACTTGGACGTCGTCAACGTCAAGTGGATTAC 132793 Query 279824 GTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGGCTT 279883 |||||| || || |||| | || || |||| ||||| ||||||||||| || Sbjct 132794 CGACTACCTCTGCAACCTCAAGACGGCCACTGCCATCATCGTCTCGCACGACTCTGGTTT 132853 Query 279884 CCTAGATGCCGTGTGCTCTGCCAT 279907 | | | ||| ||| ||| ||| Sbjct 132854 CTTGAACAACGTTTGCACTGACAT 132877 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027803271321186