Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900101485.1_202016-11-05] 2,546 sequences; 20,775,628 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq998 161 2e-34 seq1124 127 4e-24 seq1042 123 5e-23 seq2472 102 2e-16 seq505 102 2e-16 seq2517 95.1 2e-14 seq1240 86.0 1e-11 >seq998 Length=480981 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | || | || || |||||||| || || ||||| ||||| ||| Sbjct 89112 CCACCACGGAGGCGGAGAACGAGATGAAGGGTGGACTCCTTCTGAATGTTGTAATCCGAG 89053 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || ||||| ||||| | || || || || ||| Sbjct 89052 AGGGTACGGCCATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGA 88993 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||||||||| || ||||| |||||||| || |||||||| | | || || Sbjct 88992 ATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTGTCAATGGTGTCCGAAGGCTCGACC 88933 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| || || |||||||||||||| || |||||||| Sbjct 88932 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 88886 Score = 158 bits (174), Expect = 2e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || |||||||| | || | ||| || || ||||| || |||||||| || || | Sbjct 167661 CCACCACGAAGGCGGAGGACGAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCAAA 167720 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | |||||| || || || ||||| | || || || || ||| Sbjct 167721 AGGGTGCGACCATCTTCGAGCTGCTTACCAGCAAAGATGAGACGCTGCTGATCAGGGGGA 167780 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||||||||| || ||||| ||||||||| ||||||||||| | || || || Sbjct 167781 ATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGACC 167840 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||| || || ||||||||||| || || || |||||||| Sbjct 167841 TCGAGGGTGATCGTCTTACCCGTGAGGGTTTTAACAAAGATCTGCAT 167887 Score = 152 bits (168), Expect = 9e-32 Identities = 152/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 68265 GTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCG 68324 || ||||| || |||||||| || |||||||| || | |||||||| | |||||| || Sbjct 89310 GTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCAAGCTGCTTGCCA 89251 Query 68325 GCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTG 68384 || || ||||| | || || || || ||||| || |||||||| |||||||| |||||| Sbjct 89250 GCAAAGATGAGACGCTGCTGATCAGGGGGAATACCCTCCTTGTCCTGAATCTTGGCCTTG 89191 Query 68385 ACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTC 68444 ||| ||||||||||| | || || || || | |||||||| || || || | ||| Sbjct 89190 ACGTTGTCGATGGTGTCAGAGGACTCGACCTCAAGAGTGATGGTCTTGCCGGTCAAAGTC 89131 Query 68445 TTGACGAATATCTGCAT 68461 |||||||| |||||||| Sbjct 89130 TTGACGAAGATCTGCAT 89114 >seq1124 Length=239697 Score = 127 bits (140), Expect = 4e-24 Identities = 369/559 (66%), Gaps = 23/559 (4%) Strand=Plus/Minus Query 225446 TCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACGACACGTTCGTCAGGCCCTTGAGG 225505 ||||| || ||||||||||| || || ||||||| | | || | ||| |||| Sbjct 132858 TCAAGAAA-CCAGAGTCGTGCGAGACGATGATGGCAGTGGCCGTCTTGAGGTTGCAGAGG 132800 Query 225506 TGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGC 225565 | | | | ||| |||||| |||||||| |||||| || || ||||| || || Sbjct 132799 TAGTCGGTAATCCACTTGACGTTGACGACGTCCAAGTGGTTAGTGGGCTCGTCAAGGAGG 132740 Query 225566 AGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCG 225625 || ||||| || | | ||| ||||| || | || | | |||||| ||||| || ||| Sbjct 132739 AGAATGTCGGCCTTGAAGAGAATGGCACGGGCAAGGGCGACCTTCATCTTCCAACCACCG 132680 Query 225626 GACAGGGAGCCGATTGAAACAGAGTGCTTA---GCTTCGTCAAAGCCGTACTCCAGGAGC 225682 || || | |||| | |||| || | || ||||| |||||| ||| ||||| Sbjct 132679 GAGAGACCGGCGATGGGC---GAGTTCTGACGAGCATCGTCGAAGCCGACCTCGTGGAGC 132623 Query 225683 GTCTGGATAATGCGCTCG-----GGAGAGCTGCGAGCGGCAACGTTGGGGTCGGACGAGA 225737 |||| || || |||| ||| | || ||| | ||| | | |||| ||| Sbjct 132622 GTCTTGACG--GC-CTCGTCCTTGGACA--TG-GAGAG---ACGCTCG--TCGGCGCAGA 132574 Query 225738 GGTAATCATATACGGTCATGTCCGAGACAGACGCGTCAATGTCGTGGTCCACGTACACCG 225797 | ||| |||||||| || | || |||||| |||||| || |||||| | Sbjct 132573 TAAAGTCAAGGACGGTCATCTCACCTTCGGAACCGTCAAGGTCGTGCTCGACGTACCAGG 132514 Query 225798 TCCGGAGCTGAGAAGCATCGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGAGCA 225857 | |||| || | ||||| ||||| | ||||||||| | || ||||| | | Sbjct 132513 TGCGGACCTCTTCGGGCGAAGGGAAACCCTCGACCTGGCCATTGGTGATGGCACGCATGA 132454 Query 225858 GGGTACTCTTGCCCGCGCCGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGATGT 225917 |||| ||| || | ||||| ||||| || ||||| | | || ||||| | Sbjct 132453 GGGTCGACTTTCCGGAACCGTTACGACCGCAAAGACCGTATCGGTGGCCACGCTTAAGAC 132394 Query 225918 TGAGGCGCGTGGAGTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAATCGC 225977 |||| | || ||| ||||| |||||| |||| ||||| || ||||||| || | || Sbjct 132393 GGAGGGTGGCGGTGTTGAGGAGAATCTTGGCACCGTAGGCGAGCGAGAACTGACAGTTGC 132334 Query 225978 ACAGGTCCTCACCCTCCTC 225996 | ||||| ||||||||||| Sbjct 132333 AAAGGTCTTCACCCTCCTC 132315 Score = 100 bits (110), Expect = 5e-16 Identities = 118/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 224498 AGCGCGCCAAGCGACTCGCGGTCAAGGAAGTTCGTCGGCTCATCCAGGATGATAACGTGG 224557 ||||| | |||||||| ||||| | |||||| || ||||| || |||| ||| | |||| Sbjct 133825 AGCGCAGCGAGCGACTCACGGTCCAAGAAGTTGGTGGGCTCGTCGAGGACGATGATGTGG 133766 Query 224558 GGGCACTGCCACAGGGCTGCACCAACCACCAGCTTCACCTTCTGACCGCCAGAGAGGCCG 224617 || | |||| ||| ||||||| || | ||| ||||||||||| |||||||| ||| Sbjct 133765 GGTCGTCGCCAGGTGGCGGCACCAAGAACGACCTTGACCTTCTGACCACCAGAGAGACCG 133706 Query 224618 CGGATCCGCGAGTGAGTCGTGAATTCGGGGTCAAGACCAA 224657 || || ||| | ||||| ||| | || ||||||| Sbjct 133705 CGCATGGTGTTGTGCGAGGTGAACTCGCGCTCGAGACCAA 133666 >seq1042 Length=313568 Score = 123 bits (136), Expect = 5e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | || | ||| || |||||||| || |||||| | || || ||| Sbjct 114702 CCACCACGGAGACGGAGGACAAGGTGAAGGGTGGACTCCTTCTGGATGCTGTAGTCCGAG 114643 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| || || || ||||| | || |||||||| || Sbjct 114642 AGGGTGCGGCCGTCCTCGAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCGGGGGGG 114583 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| ||||||||| ||||||||||| | || || || Sbjct 114582 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 114523 Query 68415 TCCAAGGTGATGGTTTTTCCCGT 68437 || | ||||||||| || || || Sbjct 114522 TCAAGGGTGATGGTCTTACCTGT 114500 >seq2472 Length=237 Score = 102 bits (112), Expect = 2e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 68343 TGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCT 68402 ||||| || ||||| ||||||||||| || ||||| |||||||| ||||||||||| Sbjct 235 TGGTCAGGAGGAATACCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCC 176 Query 68403 GCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | || || ||||| | ||||| || ||||| || | ||||||||||| |||||||| Sbjct 175 GAGGACTCGACTTCGAGAGTGATCGTCTTTCCTGTCAACGTCTTGACGAAAATCTGCAT 117 >seq505 Length=37254 Score = 102 bits (112), Expect = 2e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 68343 TGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCT 68402 ||||| || ||||| ||||||||||| || ||||| |||||||| ||||||||||| Sbjct 37252 TGGTCAGGAGGAATACCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCC 37193 Query 68403 GCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | || || ||||| | ||||| || || || || || ||||||||||| |||||||| Sbjct 37192 GAGGACTCGACTTCGAGAGTGATCGTCTTACCGGTCAGAGTCTTGACGAAGATCTGCAT 37134 >seq2517 Length=173 Score = 95.1 bits (104), Expect = 2e-14 Identities = 118/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 68270 CTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAA 68329 ||| || || ||||| || ||||| || || | || || || | ||||| || || || Sbjct 162 CTCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCGAGTTGCTTACCAGCAAA 103 Query 68330 TATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGC 68389 || | || || ||||| || ||||| ||||||||||| || ||||| |||||||| Sbjct 102 GATCAATCGCTGCTGGTCAGGAGGAATACCTTCCTTGTCCTGGATCTTGGCCTTGACATT 43 Query 68390 CTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTT 68431 ||||||||||| | || || ||||| | ||||| || || Sbjct 42 GTCGATGGTGTCCGAGGACTCGACTTCGAGAGTGATCGTCTT 1 >seq1240 Length=316128 Score = 86.0 bits (94), Expect = 1e-11 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 177072 AGACCGAGAATTTGTTTGATGGCAGTAATCTCGGCGTTGTTAGTAATACTAGACACAGAC 177131 ||||||| || | ||||| || | |||||||| || || | || | || | Sbjct 142728 AGACCGATGATCTCCTTGATCGCTTTGATCTCGGCATTCTTCATGATCTGATCGTGAGTC 142669 Query 177132 GCATCACGGACATTCAGTAGCTTACCACGGAGGGGGAAAATTCCGTAGCGATCCCGACCC 177191 || ||||||||||| || ||||||||||| || ||||||| ||||| || |||||| Sbjct 142668 GCTTCACGGACATTGAGAAGCTTACCACGAAGCGGGAAAACACCGTAATTGTCACGACCC 142609 Query 177192 ACGACAGCAAGGCCAGCTGTGGCAAGCGTGGCGGCAGAGTCACCCTCTGTCAAAATGAGC 177251 || | |||| ||||| ||||||| ||| |||||||| || || | ||||| Sbjct 142608 ACCTCGACAAGACCAGCCACAGCAAGCGCCTTGGCGGAGTCACCTTCGGTGAGGATGAGA 142549 Query 177252 GTGCA 177256 ||||| Sbjct 142548 GTGCA 142544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921593069367120