Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900101485.1_202016-11-05] 2,546 sequences; 20,775,628 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq1109 351 2e-91 seq1432 280 3e-70 seq1262 105 1e-17 >seq1109 Length=147467 Score = 351 bits (388), Expect = 2e-91 Identities = 1029/1578 (65%), Gaps = 53/1578 (3%) Strand=Plus/Plus Query 243878 TTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCTGCGGCCATGGTGATGAGGTCC 243937 ||||| ||||| |||| | ||| | | || || ||||||||| ||||| | || Sbjct 95892 TTGAGCGACTGCGACTGGCAAATGAAAGCACCTCGATCGGCGGCCATGTCGATGATGGCC 95951 Query 243938 TTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTGAGGTGCTCGGGGAACCCTTCG 243997 ||||| || ||||| | | |||||||||| ||||| | ||||||| || | Sbjct 95952 TTCTGCGAGATCTCCCAGACAGTCTTGTAGAGCTTCTTGATACGGTCGGGGATACCGGGG 96011 Query 243998 ATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCCACAGG 244057 | ||| || | ||||| ||| |||||| || | ||| | |||||||| || Sbjct 96012 ACGTTTTGGATGGAGCCGGCGTGAGCGATGATTCGGTTTTTCATTGTGTCGTTCCAAAGT 96071 Query 244058 CCCAAGCGCTCCAGCGCCTCG-------ACCAGGTGCCTGTTCACCACCTGAAACTCTCC 244110 | | | || | | |||| |||||| | || || ||||| || || || Sbjct 96072 CTCT---GTTCGACCAACTCGCGGAGCAACCAGGGG----TTGACGACCTGGAATTCACC 96124 Query 244111 CGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCC 244170 | || || || || ||| | ||| || ||||||| || ||| || ||| Sbjct 96125 AGCAAGTACACGACGAGAGTAAATGTTCGAAGTGTAGGGCTCGAAGCACTCGTTGAAGCC 96184 Query 244171 CAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCC 244230 || ||||| || ||||| |||||||| | || || || ||| | | || Sbjct 96185 CAAGATCTGACTGGTCGAAGCAGTGGGCATGGGTGCCAACAAGAGTGAGTTACGAAGACC 96244 Query 244231 GTGCCTCTGGATGCGGAGTCT-GAGCTCGTTCCAGTCCCACATGCCCGAGAGGTCCTCGC 244289 |||| | || | || || |||| ||||||||| |||||| | Sbjct 96245 GTGCTTGGCAAT-CTTAGCCTTGAGCGAAGCCCAGTCCCA---------GAGGTCGGAGG 96294 Query 244290 GTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGG 244349 | ||| ||||||||||||| |||| || |||| | |||| || | ||| | Sbjct 96295 GAGTGACGCCCCACATGTCATACTGAAGTTCTCCCTGGGAAGCGGGCGAACCTTGGTATG 96354 Query 244350 TCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCTCTCG-TCGAGGGCGGCGTAGTAG 244408 || ||||| |||| ||| |||| || || | ||| ||||| ||||||| ||| Sbjct 96355 TCTCGTAGGTGCCGTGCTCCTGAGCCAACTCGCA-CGATCGCTCGAGAGCGGCGTGATAG 96413 Query 244409 ATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCCC 244468 ||||||||||||||| | ||||| || |||| | | ||||| ||| Sbjct 96414 ATGGTCTCGAAGATCTGCACGTTCAAACGACGCGCCTCAGGGGACTCGAAGGCATAACCC 96473 Query 244469 ATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTG 244528 || |||||||| | ||||| || ||||| || ||||| |||||||| | ||| ||| || Sbjct 96474 ATGATCATGAATGCATCGGCGAGACCCTGAACACCGATACCGATGGGACGGTGACGCATG 96533 Query 244529 TTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTG 244588 ||||| || ||||| |||||||| ||||| |||||| | |||||| | ||| Sbjct 96534 TTGGATCGACGAGCTTCTTCAACGGGGTAGTAGTTGATGTCGATGATCTTGTTCAAGTTC 96593 Query 244589 CGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCG 244648 | ||| | |||| || ||| ||| || ||||| | | || | | | Sbjct 96594 TTGCAGATGGCTTTGGCGACCTCATGCAGACGCTTGAAATCGTAGACCTTGGTAACAGGG 96653 Query 244649 GCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACC 244708 ||||| | | | |||||||| | ||||| ||||||||| || ||| Sbjct 96654 TCGATGAAGGT------------GGGGAGGGCGATGGAGGCCAAGTTGCAGACAGCGACC 96701 Query 244709 TCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCC 244768 || || | | | ||||| || || |||||||||||||| |||||||||||| || Sbjct 96702 TCATCGGGGGCAGAGTACTCGATGATTTCGGTGCAGAGGTTGGAGCACTTGATGGTACCG 96761 Query 244769 AGGTGCTGGTGATTGGACTTGGCGTT-GCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCC 244827 |||| || || ||||||||| ||| ||| |||||||||||||| ||||| || || Sbjct 96762 AGGTTCTTCTGGTTGGACTTGCGGTTAGCA-GCGTCCTTGTAGAGGATGAAAGGATTACC 96820 Query 244828 GGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGT--CCTG 244885 ||||||| ||| | |||||| | || |||||| | | |||||||| || || Sbjct 96821 GGTCTCGGTCTGAGACTCGAGGATGGCGTACCAGAGCTTCTGGGCCTTGACGGTTCGCTT 96880 Query 244886 CGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACC 244945 ||| | ||||| ||||||||||| ||| || ||| |||||| || || Sbjct 96881 ACAGCGT--CCCTCAGCCTCGTAGCGCTCGTAGAGACGCTCAAACTCGTCACCGTAGCAG 96938 Query 244946 TCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCACTCGCCGCCGTCCTTGACC 245005 ||| | |||||||||||| ||||||||||| ||| ||||| | || |||| Sbjct 96939 TCGGCAAGGCCGGGGCACTCGTTAGGGCACATGAGCGACCAATCGCCATTCTGCTCGACC 96998 Query 245006 CTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCG 245065 |||| ||||||||| ||||||| ||| || || | |||||| || | || | || Sbjct 96999 CTCTTCATGAAGAGATCGGGGACCCAAAGAGCGTAGAAGAGCTCACGGGCACGAACTTCC 97058 Query 245066 TCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCC 245125 ||| || |||||| | || || | || || ||||| || |||||| ||||| Sbjct 97059 TCCTTACCGTGGTTCTTGCGCAAGTCGAGGAACTCGAAGACATCCGAGTGCCAAGGCTCA 97118 Query 245126 ATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGC 245185 ||||||| ||| | ||| || || |||||||| || || ||||| | | | ||||| Sbjct 97119 ATGTAGATAGCAAAGGCACCAGGACGCTTGTTACCACCTTGGTCGA----CGTAACGAGC 97174 Query 245186 ----GCGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTT 245241 |||||||| || || | ||||| || ||||| | |||||||| || Sbjct 97175 AGTGTTGTTGAAGACACGGAGCATGGGCACGATACCGTTGCTGACACCGTTGGTACCGGC 97234 Query 245242 GATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGCTT 245301 ||||| | ||| | || | | | | |||| | || | || |||||| ||| Sbjct 97235 AATGTAAGAGCCGGTACCACGAATGCAGTGGATGTTGAGACCGATACCACCGGCGGTCTT 97294 Query 245302 GGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCAT 245361 |||||| | ||| ||| |||||| |||||| || || || || ||| |||||| Sbjct 97295 GGAGATCATGGCACAGGTCTTGAGGGTGTCGTAGATCCCGTCGATCGAGTCATCCTTCAT 97354 Query 245362 GTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACGAGTTGAACAGAGTGGG 245421 | ||| || || || || || ||||| || | |||| | | | |||||| || || || Sbjct 97355 GGTGACAAGGAAACACGACGAGAGCTGAGGGTGGGGGGTACCGGCGTTGAAGAGCGTTGG 97414 Query 245422 GCTGGCGTGGGTAAAGTA 245439 ||| || |||||||| Sbjct 97415 CGAGGCATGAGTAAAGTA 97432 >seq1432 Length=176812 Score = 280 bits (310), Expect = 3e-70 Identities = 497/715 (70%), Gaps = 16/715 (2%) Strand=Plus/Plus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| |||||||||||||| || ||| ||||||||||||||| || ||||| Sbjct 172336 ATCTGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGACCGCCGAGGAAATCGACCTC 172395 Query 42360 GCCAAGGACACGGCCGGCTGGGAGT-CACTGTCT--GAGAACGAAAAGTTTTTCCTCAAA 42416 |||||||| || |||||| || || || ||||| ||| || Sbjct 172396 TCCAAGGACCTTCACGACTGGGACAACAAGCTCAACGACAACGAGCGTCACTTCATCTCT 172455 Query 42417 AACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGG 42476 || | || |||||||||||||| |||||||| || ||||| |||||||| | | | Sbjct 172456 CACGTCCTTGCCTTCTTCGCCGCTTCTGACGGTATCGTCAACGAGAACCTCGTCGAGCGC 172515 Query 42477 TTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATA 42536 |||| ||||| ||| | || || || ||||||||||| |||||||| || Sbjct 172516 TTCAGTTCCGAGGTCCAGGCCGCCGAAGCCCGATGCTTCTACGGTTTCCAGATCATGATG 172575 Query 42537 GAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTC 42596 |||||| | ||||| || ||| | || || |||| ||||||| || |||| Sbjct 172576 GAGAACATCCACTCCGAAACCTACTCGCTCCTCATCGACACCTACATCCGCGAGCCCGAG 172635 Query 42597 GAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGAC 42656 |||| | || || | ||| | ||||| || ||| | ||||||||||||| || Sbjct 172636 CAGCGCGAGTTTCTCTTTGACGCCGTCGAGACTATCCCCGTCGTCAAGAAGAAGGCCGAA 172695 Query 42657 TGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTT 42716 ||||| || |||||| | | | | || || |||| ||| | || || |||||| Sbjct 172696 TGGGCCCTTCGATGGATCAACGACCGCAAGGCCACCTTCGCTGAGCGTCTCGTTGCCTTT 172755 Query 42717 ACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG 42776 |||||||||| || ||||||||||| ||| |||| ||||| ||||||||||||||| || Sbjct 172756 GCCGCCGTCGAAGGTATCTTCTTCTCAGGCTCCTTTGCCTCGATCTTCTGGCTCAAGAAG 172815 Query 42777 -AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCT 42835 ||| || |||||||| ||||||||||| ||||| |||||| | |||||||| || Sbjct 172816 CGCGGTCTC-ATGCCCGGTCTCACCTTCTCCAACGAGCTCATCTCTCGTGACGAGGGTCT 172874 Query 42836 GCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAA--- 42892 || | || |||||||||||||| ||| |||||||||| | |||| | || | Sbjct 172875 TCACACCGATTTTGCCTGCCTCCTCTTC---AGCCACCTCA---AGAAGCGCGCGCACCC 172928 Query 42893 GGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCA 42952 || |||| ||||| | ||||| || || ||||||| |||||| | || || Sbjct 172929 CGACACCGTCCTCAAGATCATTTCCGAGGCGGTCGAAATCGAGATCGAGTTCTTGACCCA 172988 Query 42953 GTCGCTGCC-CGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACAT 43006 || | || ||| | || ||||||||||||| | ||||| ||||||| Sbjct 172989 ATCAATTCCTTGTG-CGATGATCGGCATGAACCAAACGTTGATGTGTCAGTACAT 173042 >seq1262 Length=116062 Score = 105 bits (116), Expect = 1e-17 Identities = 92/112 (82%), Gaps = 2/112 (2%) Strand=Plus/Minus Query 242949 TTCCCGGACAGGACCACTCCGATCGGACAGATGATCAACTCGTACC-TGCTCAACAAGAG 243007 ||||| || ||||||||| | || || |||||||||||||| |||| ||| ||| | || Sbjct 56120 TTCCCTGAAAGGACCACTGCTATTGGTCAGATGATCAACTCCTACCTTGCCCAA-ACAAG 56062 Query 243008 CGATCTGGACGATCACGTCGTACACCTCCTGTTCTCGGCCAACCGATGGGAA 243059 |||||| |||||||| | | | |||||||| ||||| |||||||| |||||| Sbjct 56061 CGATCTTGACGATCAGGCCATTCACCTCCTCTTCTCCGCCAACCGTTGGGAA 56010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944309146404960