Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900101485.1_202016-11-05] 2,546 sequences; 20,775,628 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq1042 100 3e-16 >seq1042 Length=313568 Score = 100 bits (110), Expect = 3e-16 Identities = 260/388 (67%), Gaps = 10/388 (3%) Strand=Plus/Plus Query 20363 AATTGACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAG-TCCGCCGGGTTCCA 20421 || || || |||| ||| || || || || ||||| | | |||| || |||||||| Sbjct 42293 AACTGGCAGAACATGTGGCAAGGAGGGAGAGCCATGAGAG-CAAGATCTTTGGGGTTCCA 42351 Query 20422 CGCACACATAATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCCACAATGT-ACG 20480 |||| | | ||| || | |||| || || || || || || | | | ||| Sbjct 42352 TGCACTGAGCAAGATCCTGCGATCGGTGGGGTTGTTCTTGATCTTGTCAATGACTTCACG 42411 Query 20481 ACAATTGGTCAAACCCCTGGCCTGTATAGTCAGCATCCGCGTCCACGTACGCCGCCCCAA 20540 ||||||||||| || || || || ||||| | || |||| ||| | || |||| Sbjct 42412 -CAATTGGTCAACGCCTTGACCGGTGTAGTCGGTGTCGCAGTCCTTGTATTCTGCGCCAA 42470 Query 20541 AGTGCCTCCACTGGAAACCGTAAACAGGTCCCAAATCCCCCTCCCTTCTGTGCGCCAGGC 20600 |||| | ||| ||||| ||||| || || |||||||| || || | | ||| || | Sbjct 42471 AGTGTCGCCATTGGAAGCCGTAGACTGGACCCAAATCACCTTCTCGCCGGTGTTGCAAGT 42530 Query 20601 CGCGCCCGGCCAGGAACTCCCTGGAGCCATTTTTGTCCCATATCTTGACTCC--TGTTCT 20658 | || | | |||||||| | || || || |||||| || | || || ||| Sbjct 42531 CACGTGAGTCGAGGAACTCTCGCGATCCGTTACCGTCCCAGATGTGCACGCCCTTGTCAG 42590 Query 20659 TGA-AAGCTCCCTGGAGTCAGTACTCCCCTTCAGAAACCAAAGCAGCTCTTGCACTACGC 20717 | | ||||| ||||||| || | || || |||||| || ||||| | || ||||| Sbjct 42591 TAAGAAGCT---TGGAGTCGGTCTTGCCAGCCACAAACCAGAGGAGCTCCTCCAGTACGC 42647 Query 20718 CTCGCCAAAACACCCGCTTTGTGGTTAG 20745 ||||| | || || ||||||||||| || Sbjct 42648 CTCGCAAGAAGACACGCTTTGTGGTGAG 42675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441358753310640