Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900101485.1_202016-11-05] 2,546 sequences; 20,775,628 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq1240 104 5e-17 >seq1240 Length=316128 Score = 104 bits (114), Expect = 5e-17 Identities = 834/1323 (63%), Gaps = 54/1323 (4%) Strand=Plus/Minus Query 297157 TTCTTCGATCTTACCTTTGAATCCTCGATACCACGGTTTCATTTCGACGAGATCTTCTCC 297216 ||| ||||| | ||| |||| || || |||||||| ||||| ||||| || || || Sbjct 143842 TTCCTCGATGTCACCGGTGAAGCCACGGTACCACGGCTTCATGGGGACGACGTCCTCACC 143783 Query 297217 AGCAATCAATCGCTTCACGTTGTCTACGATGTCTTTTGGATTGTAACTAGGGATATTAGT 297276 ||| || ||| || |||| | || ||||| | |||||||| | || | || Sbjct 143782 AGCCATGCGTCGTCGCAAGTTGGCAACAATGTCATGCGGATTGTAGTTGGGCACGAAGGT 143723 Query 297277 CGACCAACCGGTACCGATTCCACTCGAACCATTCACCAGAATGCTCGGAATAACAGGCAC 297336 ||||| || |||||||| || | ||| || | ||| | |||| |||||||| Sbjct 143722 AGACCATCCAGTACCGATACCTTCGGCACCGTTGAGCAGCACCTGAGGAACAACAGGCAT 143663 Query 297337 ATAATACTCTGGTTCGATCTTGTCACCGTCATCATACAGATATTTCAGAAGATTATCGTC 297396 || ||| || ||||| | | || ||||| | || |||| || || |||||| Sbjct 143662 GTACCACTGCGGCTCGATACTCTGTCCATCATCGTCCAAGTATTCAAGCAGCGCATCGTC 143603 Query 297397 CGTATCGACGAAAACCTGTCGAGTCTGAGGGTT--CAGTTTTGTGAAAATATATCGTGCA 297454 | | || | || | | | | ||| || ||| ||||||||||| | || Sbjct 143602 GTTCT-GAGGGAA-CAAGGCACGCGTGATCTTTGGCAGCGCGGTGAAAATATACCTGGCC 143545 Query 297455 CTCGCGTGATCCTTACCACCCTGCAATCTCGAACCGAACTGGCCCTCCGGCAACAACCAG 297514 || |||||||||||| |||| | | |||||| || ||| ||| | | || Sbjct 143544 GAGGCAGCATCCTTACCACCAAGCAAACGAGTACCGAATTGACCCCTTGGCTCGAGCAAG 143485 Query 297515 TTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTCCCTTGCAGAGAT 297574 || | ||| ||||| || ||| ||| |||||| || ||||||||| || || Sbjct 143484 TTAACGTTGTTGCTACCCACAAAATTCTGTGCGAGACCAACGATGGTCATGGTGAGCGAC 143425 Query 297575 GCTTCGCCATGGTGATAGGCGCTATGCT--CTGCAACGTAACCGCTGAACTGTGCAACCT 297632 ||| || ||||| ||||| | || | | | |||| |||| || || ||||||| Sbjct 143424 TGTTCACCGTGGTGGTAGGC--TGTGGTACCAGACACGTGACCGACGAGTTGAGCAACCT 143367 Query 297633 TCACGTCG--GTCGTCAAATTGCGCTTGAAAGCTGAATATATCACTTTCCGTTGAGAAGG 297690 | | || |||| | ||||| ||||| | | | ||||| || || ||| || Sbjct 143366 TGATTTCACCGTCGCCC--TTGCGGTTGAACGTGCCAAAGATCACCTTTCGCTGACCTGG 143309 Query 297691 TTTGAAACCATCAACGACCGACGGAATGCTTCGTTCCAGATCGTACCGCGAGAACAAAAT 297750 |||| ||||||||| | ||||| || || ||| | |||||| | || Sbjct 143308 CTTGAGACCATCAACAGCAGACGGGATCGAACGCATGTTGTCGGCCATCGAGAAGAGGAT 143249 Query 297751 AAGTTCCTTGTCGATGAAGTCGGGAACGGGAACCTCGGGCTTCTTGTGGTCAAGTTGATT 297810 || ||||||| ||| || |||| ||||| || | | | |||||| || | | Sbjct 143248 GAGCTCCTTGTTGATAAAATCGGCGTAGGGAATCTTGTCGATGTCGTGGTCGAGGTAGGT 143189 Query 297811 TCCTGGTTCGTA-TGCCGTCATCCACTCCTTGCGATCCTCGGCTCGTGACTTGTTGAAAG 297869 ||| || | | || || | ||||||||| ||||| || ||| ||||||||||| Sbjct 143188 TCCAGGACGGAACTGACGG-AGCCACTCCTTTCGATCGTCCGCTTTCTTCTTGTTGAAAG 143130 Query 297870 AACGGTCAATGAGCTCTC---CGGAATC---GGAAGTCCACAT-AAACGTCTTCATGAGA 297922 | | || || ||||| | | ||| || || || ||| | | |||| | Sbjct 143129 CAAGATCGATCAGCTCGCGATCACCATCTTTGGTGGT----ATCAAAGGGCAACATGTGC 143074 Query 297923 GACTTCAGATTGCTGAAGTATTTTTTGGCATCTGCACTGGAACTC----GTACCAAGCCC 297978 | || | | ||| || |||||||| ||| || | || || || || || Sbjct 143073 TTGTCCATAGCACGGAAATACTTTTTGGCGTCT----TGCGAGTCCGAGGTTCCGAGACC 143018 Query 297979 CTTAAAATACTTGGTCGTCCATTTCTT--CATATCTTGTGTCTTCA--CGAAGTCTTCGA 298034 ||| | |||||| | ||| ||| | | || | |||| | ||||| | | Sbjct 143017 CTTGTAGTACTTGATGCGCCAACCCTTTCCGTTGCTGTTCGCTTCCTTCCAAGTCAT-GT 142959 Query 298035 AGTCAGGAAGACTGAAAAATT----CTCTGACTTCTTTTCCCTTCCTGGCAACT-ACGAT 298089 | || |||| |||| || ||| |||||| ||||| || || | || || Sbjct 142958 ACTCGGGAATCGTGAAGAAGGAGAGCTC---CTTCTTA-CCCTTACTA-CACTTGACAAT 142904 Query 298090 AGGCGTGATGAACTTCTTCAAGAACCCTGGAATTTCTAGAAGATTAGGGAAACAGCTATG 298149 || |||||||||| | ||| |||| | || || ||| | || | Sbjct 142903 GGGAGTGATGAACTCGACGAGGAAATTAGGAAGCTTGAGCAGCGAGGGGTAGAAGTGGTC 142844 Query 298150 GAAAAAGTTCATGACGAGACCAGAAATGTGAGTTCCGTCAACATCCGCGTCGGTCATGAT 298209 || ||||| |||| |||||| ||||| | || || |||| ||||||||||| Sbjct 142843 GAGGAAGTTGATGATGAGACCCTTGATGTGCGAACCATCGTGATCCTGATCGGTCATGAT 142784 Query 298210 CATCACATGACCGTAACG-AAGC-GAGGACGTGTCTTTGTACACTTTACCGGTTTGAAGG 298267 ||| | | ||||| || |||| | ||||| | |||| || ||| || || Sbjct 142783 CATGATACTGCCGTATCGCAAGCTGCTGACGT--CGAGGTACTGCTTGCCGTGCTGCAGA 142726 Query 298268 CCGAGAATTTGTTTGAGCGCTGTGATTTCTTCGTTCTTCGTGATGCTTGCCACGGAT-GC 298326 |||| || | |||| |||| |||| || | |||||| |||| || | | | || Sbjct 142725 CCGATGATCTCCTTGATCGCTTTGATCTCGGCATTCTTCATGAT-CTGATCGTGAGTCGC 142667 Query 298327 ATCGCGGACATTCAATAGTTTTCCACGAAGAGGGAACACTCCATATCTCTCGCGACCGAC 298386 || |||||||| | || || |||||||| ||||| || || || | || ||||| || Sbjct 142666 TTCACGGACATTGAGAAGCTTACCACGAAGCGGGAAAACACCGTAATTGTCACGACCCAC 142607 Query 298387 CACGGACAGCCCTGCGATTGCAAGTGTCGCTGCGGAATCCCCCTCCGTCAGAATGAGAGT 298446 | || || || || | ||||| | | ||||| || || || || || |||||||| Sbjct 142606 CTCGACAAGACCAGCCACAGCAAGCGCCTTGGCGGAGTCACCTTCGGTGAGGATGAGAGT 142547 Query 298447 GCA 298449 ||| Sbjct 142546 GCA 142544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102844023365100