Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900101485.1_202016-11-05] 2,546 sequences; 20,775,628 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq1109 214 2e-50 seq1240 140 4e-28 seq1432 129 7e-25 >seq1109 Length=147467 Score = 214 bits (236), Expect = 2e-50 Identities = 1111/1748 (64%), Gaps = 51/1748 (3%) Strand=Plus/Plus Query 113597 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATCGAGGAC 113656 ||||||||||| | ||||||||||| |||| ||||||| | || | |||||||||| Sbjct 95799 CGGAGGTAGTAGGTACCCGTCTTGAGACCCTTCTTCCAGCCGTAGAAGTGCATCGAGGTG 95858 Query 113657 AACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 113716 | || || || ||| || | || || | || || || ||||| Sbjct 95859 AGCTGACCGAACGTAGGAGCGGACAGGTGGATATTGAGCGACTGCGACTGGCAAATGAAA 95918 Query 113717 CGTCCACGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCTG 113776 || ||||| || ||||| || || | ||||| | ||| ||||| ||||| || Sbjct 95919 GCACCTCGATCGGCGGCCATGTCGATGATGGCCTTCTGCGAGATCTCCCAGACAGTCTTG 95978 Query 113777 TAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGAGCCACCCGCCTTG 113836 ||||| ||||| ||| || |||||| | || |||||||||||||| | | || Sbjct 95979 TAGAGCTTCTTGATACGGTCGGGGATACCGGGGACGTTTTGGATGGAGCC----GGCGTG 96034 Query 113837 ACC-ATGA---GATCCTTCATA---TCCTTTGACCAGAGACCAATCTTTTTGAGATCCTC 113889 | | |||| | | ||||| || || ||| || | ||| || || ||| Sbjct 96035 AGCGATGATTCGGTTTTTCATTGTGTCGTT---CCAAAGTC---TCTGTTCGACCAACTC 96088 Query 113890 CACGAGATGCTTA---TTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGA-TAGA 113945 ||| | ||||| || || ||||| || || || | ||| || | Sbjct 96089 GCGGAGCAACCAGGGGTTGACGACCTGGAATTCACCAGCAAGTACACGACG-AGAGTAAA 96147 Query 113946 TATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTG 114005 | || | ||||| ||||| |||||||| ||| |||||||| || ||| || || | Sbjct 96148 TGTTCGAAGTGTAGGGCTCGAAGCACTCGTTGAAGCCCAAGATCTGACTGGTCGAAGCAG 96207 Query 114006 TGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGA 114065 ||||||||||||||| | || |||||| ||||| | | ||| |||||| Sbjct 96208 TGGGCATGGGTGCCAACAAGAGTGAGTTACGAAGACCGTGCTTGGCAATCTTAGCCTTGA 96267 Query 114066 GGGCGTCCCAGTCGTAG---TTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGA 114122 | | ||||||| || | | || | ||| ||||| ||| |||| || Sbjct 96268 GCGAAGCCCAGTCCCAGAGGTCGGAGGGAGTGACGCCC---CACATGTCATACTGAAGTT 96324 Query 114123 TACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAATT 114182 || ||||| || ||||| || | |||||||||| | ||| | ||| ||||| | Sbjct 96325 CTCCCTGGGAAGCGGGCGAACCTTGGTATGTCTCGTAGGTGCCGTGCTCCTGAGCCAACT 96384 Query 114183 CGGA-GCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCC 114241 || | | |||| ||||| || |||||||| || ||||| || || | | |||| Sbjct 96385 CGCACGATCGC-TCGAGAGCGGCGTGATAGATGGTCTCGAAGATCTGCACGTTCAAACGA 96443 Query 114242 TTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGG 114301 ||||| ||| || || || | | || ||| |||| |||||||| || Sbjct 96444 CGCGCCTCAGGGGACTCGAAGGCATAACCCATGATCATGAATGCATCGGCGAGACCCTGA 96503 Query 114302 ACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGATAA 114361 ||||||| || || || || || | ||| || || ||||| || ||||| || Sbjct 96504 ACACCGATACCGATGGGACGGTGACGCATGTTGGATCGACGAGCTTCTTCAACGGGGTAG 96563 Query 114362 AAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGC 114421 | || | ||||| | | | || | || ||| || | || | || ||||| || Sbjct 96564 TAGTTGATGTCGATGATCTTGTTCAAGTTCTTGCAGATGGCTTTGGCGACCTCATGCAGA 96623 Query 114422 TTTTCGTAATCAAA-ACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGC 114480 | | |||| | || | || | | || | | || |||||||| || || Sbjct 96624 CGCTTGAAATCGTAGACCTTG-GTAACAGGGTCGATGAAGGTGGGGAGGGCGATGGAGGC 96682 Query 114481 CAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATT 114540 || || || |||| | |||||| ||| |||||| || ||||| || || | || Sbjct 96683 CAAGTTGCAGACAGCGACCTCATCGGGGGCAGAGTACTCGATGATTTCGGTGCAGAGGTT 96742 Query 114541 TGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTA 114600 || | ||| ||||| || | |||||| || || ||||| |||| || |||||||| Sbjct 96743 GGAGCACTTGATGGTACCGAGGTTCTTCTGGTTGGACTTGCGGTTAGCAGCGTCCTTGTA 96802 Query 114601 AAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CATCGG 114659 || ||| | || | || ||||| || || |||| ||| || || | ||||| | || | Sbjct 96803 GAGGATGAAAGGATTACCGGTCTCGGTCTGAGACTCGAGGATGGCGTACCAGAGCTTCTG 96862 Query 114660 CGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCTTCAA 114719 | || | || || || || ||||| ||||||| |||||| |||| Sbjct 96863 GGCCTTG-ACGGTTCGCTTACAGCGTCCCTCAGCCTCGTAGCGCTCGTAGAGACGCTCAA 96921 Query 114720 ACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATT 114779 |||| ||||| | || | || || || || | ||||| | ||| ||||| | Sbjct 96922 ACTCGTCACCGTAGCAGTCGGCAAGGCCGGGGCACTCGTTAGGGCACATGAGCGACCAAT 96981 Query 114780 GACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTGAGAAGAGAT 114839 ||| || ||| || | |||||||||||| || |||| ||| ||||| ||||||| | Sbjct 96982 CGCCATTCTGCTCGACCCTCTTCATGAAGAGATCGGGGACCCAAAGAGCGTAGAAGAGCT 97041 Query 114840 CCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATAT 114899 | || ||| |||| || | || || || ||||| || | || || | || || Sbjct 97042 CACGGGCACGAACTTCCTCCTTACCGTGGTTCTTGCGCAAGTCGAGGAACTCGAAGACAT 97101 Query 114900 CCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGACG------ACCAGCCT 114953 ||| |||||| || || | ||| | || | | || | |||| |||| | | Sbjct 97102 CCGAGTGCCAAGGCTCAATGTAGATAGCAAAGGCACC---AGGACGCTTGTTACCACCTT 97158 Query 114954 GGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATACCAT--CAGA 115011 ||| || || | || ||| || || || || ||||| || | |||||| | | || Sbjct 97159 GGTCGACGTAACGAGCAGTGTTGTTGAAGACACGGAGCATGGGCACGATACCGTTGCTGA 97218 Query 115012 TTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCA-TGGATGTGCATAC 115070 || || || || ||| ||| | | | || || ||||||| | || Sbjct 97219 --CACCGTTGGTACCGGCAATGTAAGAGCCGGTACCAC-GAATGCAGTGGATGTTGAGAC 97275 Query 115071 CAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCGT 115130 | ||||| || || ||| ||||| || || | |||| || |||||||||||| Sbjct 97276 CGATACCACCGGCGGTCTTGGAGATCATGGCACAGGTCTTGAGGGTGTCGTAGATCCCGT 97335 Query 115131 CGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTAC 115190 ||||||||||| |||| | | || |||||| || ||| | || || || |||| Sbjct 97336 CGATCGAGTCATCCTTCATGGTGACAAGGAAACACGACGAGAGCTGAGGGTGGGGGGTAC 97395 Query 115191 CAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATAC-CTTGGGACATCTTATCGTAG 115249 | ||||||||||| ||||| | || | || || ||| ||| ||||| | ||| Sbjct 97396 CGGCGTTGAAGAGCGTTGGCGAGGCAT-GAGTAAAGTACTTTTGCGACATGAGGTTGTAC 97454 Query 115250 GTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACATG 115309 ||||| | | |||||| | ||||||||||||| | ||| ||||| | |||| Sbjct 97455 GTCTCAATAGCACTCTCAATGTCCTGGCCGTGAATACCGACAGCGACACGCATGATCATG 97514 Query 115310 TATTGGGG 115317 | ||||| Sbjct 97515 TGCTGGGG 97522 >seq1240 Length=316128 Score = 140 bits (154), Expect = 4e-28 Identities = 290/425 (68%), Gaps = 10/425 (2%) Strand=Plus/Minus Query 172576 CTTGAGGAGGGATGGCCAGAAGTAGTGGATCATATTCAGGATGAGACCCTTAATGTGTGA 172635 |||||| || || || |||||| || || | || | |||||||||||| ||||| || Sbjct 142870 CTTGAGCAGCGAGGGGTAGAAGTGGTCGAGGAAGTTGATGATGAGACCCTTGATGTGCGA 142811 Query 172636 ACCATCGTTATCCGCATCCGTCATAATCATAAGCCGACCATAGCG-AAGCTCGGAAACAT 172694 |||||||| |||| ||| ||||| ||||| | | || || || ||||| | || | Sbjct 142810 ACCATCGTGATCCTGATCGGTCATGATCATGATACTGCCGTATCGCAAGCT-GCTGACGT 142752 Query 172695 CTTGATACTCCTTACCCTGTTGAAGACCCAAGATCTTCTTGAGATCATTGAACTCTTGGT 172754 | | |||| ||| || || || ||||| | ||||| ||||| | |||| ||| | Sbjct 142751 CGAGGTACTGCTTGCCGTGCTGCAGACCGATGATCTCCTTGATCGCTTTGATCTCGGCAT 142692 Query 172755 TTGATGTGAGTTGCGCCACTGAAGCATCGCGGACATTTTTACACTTCCCACGGAGAGGGA 172814 | ||| || | | || || |||||||| | ||| ||||| || |||| Sbjct 142691 TCTTCATGATCTGATCGTGAGTCGCTTCACGGACATTGAGAAGCTTACCACGAAGCGGGA 142632 Query 172815 ACACACCGTAGTGATCACGACCAACCACAGAAAGACCAGCAACTGCGAGGGTCTTCGCGG 172874 | |||||||| | |||||||| ||| | ||||||||| || || || | ||| |||| Sbjct 142631 AAACACCGTAATTGTCACGACCCACCTCGACAAGACCAGCCACAGCAAGCGCCTTGGCGG 142572 Query 172875 AATCACCCTCCGTCACGATGAGCGTACACTTTCCAGATTGTGCCGTC-CCCGCCTTGTTC 172933 | ||||| || || | |||||| || || | | | | | | | | || || ||||| Sbjct 142571 AGTCACCTTCGGTGAGGATGAGAGTGCA-GTCCTTGGCTTTCCTGCCACCAGCGTTGTTG 142513 Query 172934 GCATCGTCCAACTTGGGAATACCAGTAATTTTGGACTTGCG---GGCACCATCTGTCTTC 172990 ||||| || | ||||||||| || ||| ||| |||| | ||||| |||||| Sbjct 142512 GCATCTTCAAGCTTGGGAATGTTGGTGATTCTGG---TGCGCTTGTGTCCATCGGTCTTC 142456 Query 172991 TTGAG 172995 || || Sbjct 142455 TTAAG 142451 >seq1432 Length=176812 Score = 129 bits (142), Expect = 7e-25 Identities = 125/161 (78%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 126046 GGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCC 126105 |||||| || ||| |||||||||||||| |||||||| || || |||||| || || Sbjct 172890 GGCAAAATCGGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTGAGACC 172831 Query 126106 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGAT 126165 ||||||||||| |||||||| | |||||| |||| ||| || || ||||||||||| Sbjct 172830 GGGCATGAGACCGCGCTTCTTGAGCCAGAAGATCGAGGCAAAGGAGCCTGAGAAGAAGAT 172771 Query 126166 TCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGG 126206 || || || || || |||| |||||||||||| |||| Sbjct 172770 ACCTTCGACGGCGGCAAAGGCAACGAGACGCTCAGCGAAGG 172730 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597334589221680