Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900101485.1_202016-11-05] 2,546 sequences; 20,775,628 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq1109 320 2e-82 >seq1109 Length=147467 Score = 320 bits (354), Expect = 2e-82 Identities = 1104/1700 (65%), Gaps = 40/1700 (2%) Strand=Plus/Minus Query 93733 TTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGGGTTTCCGAGCGACCG 93792 ||||| || || ||| || ||| | ||| || | |||| ||| | ||||| || Sbjct 97579 TTCAAGACCCTCGAGCGATCCTACTTGCTCCGTATCAACGGCAAGGTCGCTGAGCGTCCC 97520 Query 93793 CACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGACATGCCGAATGTTTTG 93852 || || || | ||||| ||||| |||| ||||||||||| ||||| || || | | Sbjct 97519 CAGCACATGATCATGCGTGTCGCTGTCGGTATTCACGGCCAGGACATTGAGAGTGCTATT 97460 Query 93853 CGGGCTTTCAGAGACATGCGGGACAAGAGGTATAC-CATGGCCACCCCGACCCTGTTCAA 93911 | | | || |||| | | ||| | ||| |||| || | || || || ||||| Sbjct 97459 GAGACGTACAACCTCATGTCGCAAAAGTACTTTACTCATG-CCTCGCCAACGCTCTTCAA 97401 Query 93912 CGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGATGACGAACAAGGCCGACTC 93971 ||| || ||||| || ||| | || ||||||||||| | || | |||| ||||| Sbjct 97400 CGCCGGTACCCCCCACCCTCAGCTCTCGTCGTGTTTCCTTGTCACCATGAAGGATGACTC 97341 Query 93972 CATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTCAAAATACGCGGGGGG 94031 ||| ||| || | ||||| ||||||| |||||| | ||||| || ||| || || Sbjct 97340 GATCGACGGGATCTACGACACCCTCAAGACCTGTGCCATGATCTCCAAGACCGCCGGTGG 97281 Query 94032 AATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACATCCGCGGTACCAATGG 94091 ||||| ||| ||||| | | |||| | || || ||||| ||||||||| || Sbjct 97280 TATCGGTCTCAACATCCACTGCATTCGTGGTACCGGCTCTTACATTGCCGGTACCAACGG 97221 Query 94092 CACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCGGCGCGCTACGTGGA 94151 | |||||| |||| || |||||||| |||||||||||| | || || ||||| || Sbjct 97220 TGTCAGCAACGGTATCGTGCCCATGCTCCGTGTCTTCAACAACACTGCTCGTTACGTCGA 97161 Query 94152 CCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCCTGGCACGCGGA 94211 ||| |||||| | | | ||| | || || |||| | ||||| |||||| |||| Sbjct 97160 CCAAGGTGGTAACAAGCGTCCTGGTGCCTTTGCTATCTACATTGAGCCTTGGCACTCGGA 97101 Query 94212 CGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCTGGAGAGGGCCAGAGA 94271 || | ||| ||||| |||| ||||||||||| || || | | ||| | || Sbjct 97100 TGTCTTCGAGTTCCTCGACTTGCGCAAGAACCACGGTAAGGAGGAAGTTCGTGCCCGTGA 97041 Query 94272 CCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCGTCGAGAAAAACTCCGC 94331 |||||||||||||| ||||| || || || || ||||| | |||||| | || || Sbjct 97040 GCTCTTCTACGCTCTTTGGGTCCCCGATCTCTTCATGAAGAGGGTCGAGCAGAATGGCGA 96981 Query 94332 CTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGACGTTTGTGGATCGCG-TT 94390 ||| || | || || || || || ||||| || ||||| | || | || | Sbjct 96980 TTGGTCGCTCATGTGCCCTAACGAGTGCCCCGGCCTTGCCGACTGCTACGG-TGACGAGT 96922 Query 94391 TTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGCCAGGAAGGTTA---TGGATG 94447 |||| | || | || ||||| | |||| | | | | ||| | | | | Sbjct 96921 TTGAGCGTCTCTACGAGCGCTACGAGGCTGAGGG-ACG--CTGTAAGCGAACCGTCAAGG 96865 Query 94448 CTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGGGTACGCCCTACATCT 94507 | |||||| ||| | ||| | || ||| ||||| |||| || | |||| Sbjct 96864 CCCAGAAGCTCTGGTACGCCATCCTCGAGTCTCAGACCGAGACCGGTAATCCTTTCATCC 96805 Query 94508 TGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCGGGGTGATCAAGAGCT 94567 | | ||||||| ||| ||| ||||||||||||| || ||||||| |||||| ||| Sbjct 96804 TCTACAAGGACGCTGCTAACCGCAAGTCCAACCAGAAGAACCTCGGTACCATCAAGTGCT 96745 Query 94568 CGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAGATTGCTGTGTGTAACC 94627 | || || |||||||| || ||||||| || | || || ||| | ||||| || ||| Sbjct 96744 CCAACCTCTGCACCGAAATCATCGAGTACTCTGCCCCCGATGAGGTCGCTGTCTGCAACT 96685 Query 94628 TGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTAC--ACGTCTACTGCTTCGTT 94685 ||| ||||||| ||| |||| ||| | ||| ||| | |||||| ||| Sbjct 96684 TGGCCTCCATCGCCCTCCCCACCTTCAT-CGACCCTGTTACCAAGGTCTACGATTTCAAG 96626 Query 94686 CGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGGATGGTCTTGAACCTGAACAGGGTAAT 94745 || |||| | ||| |||| | || | |||| |||||| | | || Sbjct 96625 CG-TCTGCATGAG---------GTCGCCAAAGCCATCTGCAAGAACTTGAACAAGATCAT 96576 Query 94746 CGACAAGAACTTCTACCCCGTCCCGGAGG--CGGAGAACTCAAACCTGAAGCATCGGCCC 94803 ||||| |||| ||||||||| || | || || || ||| || || || ||| Sbjct 96575 CGACATCAACTACTACCCCGTTGAAGAAGCTCGTCGA--TCCAACATGCGTCACCGTCCC 96518 Query 94804 ATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGATGCGTCTGCCCTACGAC 94863 ||||| ||||| || |||||| |||| || || | |||| ||| || ||| ||| Sbjct 96517 ATCGGTATCGGTGTTCAGGGTCTCGCCGATGCATTCATGATCATGGGTTATGCCTTCGAG 96458 Query 94864 TCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGAAAGCATTTATTACGGGGCCATG 94923 || || ||| ||||||| || | || ||||| | ||| ||| ||| || | Sbjct 96457 TCCCCTGAGGCGCGTCGTTTGAACGTGCAGATCTTCGAGACCATCTATCACGCCGCTCTC 96398 Query 94924 AAACAATCCGTCCACTTGGC-CAGATCGGACGGCGGGCCACACGAATCGTTCCGCGGATC 94982 | | ||| | | ||||| || ||| ||| | |||| | | || || || Sbjct 96397 GAGCGATCGTGCGAGTTGGCTCA----GGAGCACGGCACCTACGAGACATACCAAGGTTC 96342 Query 94983 GCCCTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGGTGTGAAGCCCTCGGGTCTGTA 95042 |||| ||||| |||||| ||| | ||||| || | ||||| | || | Sbjct 96341 GCCCGCTTCCCAGGGAGAACTTCAGTATGACATGTGGGGCGTCACTCCCTCCGACCTCTG 96282 Query 95043 CGACTGGGAAGCTCTACGCGCTGATGTTATCAAACACGGTGTGAAAAACGCGCTGCTTG- 95101 ||||||| | || ||| | || ||| |||||| | ||| | || |||| Sbjct 96281 GGACTGGGCTTCGCTCAAGGCTAAGATTGCCAAGCACGGTCTTCGTAACTCACT-CTTGT 96223 Query 95102 TGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAACGAGTCGTTCGAAC 95161 |||| ||||||||||| || || || |||||| | ||| |||||||| ||||| | Sbjct 96222 TGGCACCCATGCCCACTGCTTCGACCAGTCAGATCTTGGGCTTCAACGAGTGCTTCGAGC 96163 Query 95162 CCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTCCCCGTCATCAACA 95221 ||| ||| || ||| | ||| | || || || || || ||||||| ||| ||||| Sbjct 96162 CCTACACTTCGAACATTTACTCTCGTCGTGTACTTGCTGGTGAATTCCAGGTCGTCAACC 96103 Query 95222 AGCACCTCCTACGGGACCTGACGTC--TCTGGGTGTGTGGGGTGACAAGGTCAAGAACCA 95279 | || || || || ||| | | | | ||| |||| | || |||| Sbjct 96102 CCTGGTTGCTCCGCGAGTTG--GTCGAACAGAGACTTTGGAACGACACAATGAAAAACCG 96045 Query 95280 ACTGCTACGCGC-CAACGGCTCCGTCCAGAACATCCCGCAAATACCGGAGGACATCAAGG 95338 | | | ||| | | ||||||| |||| ||| |||| || || || |||||| Sbjct 96044 AAT-CATCGCTCACGCCGGCTCCATCCAAAACGTCCCCGGTATCCCCGACCGTATCAAGA 95986 Query 95339 CGCTCTACAAGACCGTGTGGGAGATCCCGCAGCGCGTGATACTCGACCACGCGGCCGCCC 95398 |||||||||||| || ||||||||| ||||| | || ||||| || |||| | Sbjct 95985 AGCTCTACAAGACTGTCTGGGAGATCTCGCAGAAGGCCATCATCGACATGGCCGCCGATC 95926 Query 95399 GCGGGCCCTTCATCTGCCAG 95418 | || | ||||| |||||| Sbjct 95925 GAGGTGCTTTCATTTGCCAG 95906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494707455434160