Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900101485.1_202016-11-05] 2,546 sequences; 20,775,628 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq1109 147 2e-30 seq998 98.7 1e-15 seq2517 93.3 4e-14 seq1042 82.4 8e-11 >seq1109 Length=147467 Score = 147 bits (162), Expect = 2e-30 Identities = 366/543 (67%), Gaps = 27/543 (5%) Strand=Plus/Plus Query 153596 GGCAATAGACGCCAGATTACAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTC 153655 ||| || || |||| || ||||| || ||| |||| | | ||||| | ||| || Sbjct 96671 GGCGATGGAGGCCAAGTTGCAGACAGCGACCTCATCGGGGGCAGAGTACTCGATGATTTC 96730 Query 153656 GGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATT-GC 153714 || |||||||||| ||| || ||| || | || | ||| ||| ||||| || || Sbjct 96731 GGTGCAGAGGTTGGAGCACTTGATGGTACCGAGGTTCTTCTGGTTGGACTTGCGGTTAGC 96790 Query 153715 ACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGATAAACC 153774 | ||||| ||| |||| ||| | || ||||||||| || | |||| ||| | Sbjct 96791 A-GCGTCCTTGTAGAGGATGAAAGGATTACCGGTCTCGGTCTGAGACTCGAGGATGG-CG 96848 Query 153775 TATGC-AGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCG 153833 || || | ||| || || || | |||| ||||| |||||| |||||| Sbjct 96849 TACCAGAGCTTCTGGGCCTTGACGGTTCGCTTACAGCGTCCCTCAGCCTCGTAGCGCTCG 96908 Query 153834 TACAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACAC 153893 || || |||||||||||||| |||||||||||||| |||||||| |||| | || ||| Sbjct 96909 TAGAGACGCTCAAACTCGTCACCGTAGCAGTCGGCAAGGCCGGGGCACTCGTTAGGGCAC 96968 Query 153894 ATCAGCGACCACATATCG----TCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCA 153949 || |||||||| |||| || || | ||| | |||||| ||||| || ||||| Sbjct 96969 ATGAGCGACCA---ATCGCCATTCTGC-TCGACCCTCTTCATGAAGAGATCGGGGACCCA 97024 Query 153950 GAGCGCGTACATGAGGTCGCGCGC-----CTTGCAATCCTCCGCGCCCATGTTGCGTTTC 154004 || ||||| | ||| || || || ||| | |||| || | ||||| | Sbjct 97025 AAGAGCGTAGAAGAGCTCACGGGCACGAACTTCC--TCCTTACCGTGGTTCTTGCG---C 97079 Query 154005 AGATTGA-GCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACC 154063 | | || | || | | ||| || | |||||| || |||||||||| || | |||||| Sbjct 97080 AAGTCGAGGAACTCGA-AGACATCCGAGTGCCAAGGCTCAATGTAGATAGCAAAGGCACC 97138 Query 154064 TTTACGC---TTTCCGCCCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCAT 154120 |||| || || || || ||||||| || | | ||||||||||| || | ||| Sbjct 97139 AGGACGCTTGTTACCACCTTGGTCGACGTAACGAGCAGTGTTGTTGAAGACACGGAGCAT 97198 Query 154121 GGG 154123 ||| Sbjct 97199 GGG 97201 >seq998 Length=480981 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| | || || || ||||| || ||||| | | Sbjct 167694 GACTCCTTCTGGATGTTGTAGTCCAAAAGGGTGCGACCATCTTCGAGCTGCTTACCAGCA 167753 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| || || || || || ||||| ||||| ||| || || | Sbjct 167754 AAGATGAGACGCTGCTGATCAGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTGACG 167813 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | ||||| ||||||| || | ||| ||||| || || ||||| Sbjct 167814 TTGTCGATGGTGTCCGAAGACTCGACCTCGAGGGTGATCGTCTTACCCGTGAGGGTTTTA 167873 Query 138601 ACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 167874 ACAAAGATCTGCAT 167887 Score = 86.0 bits (94), Expect = 6e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 138405 AACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTC 138464 ||| | ||| | | | |||||||| ||||||||||| || | ||||| ||||| Sbjct 89095 AACGAGATGAAGGGTGGACTCCTTCTGAATGTTGTAATCCGAGAGGGTACGGCCATCCTC 89036 Query 138465 GAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGT 138524 ||| || || || | |||| |||||||| || || || || || ||||| ||||| Sbjct 89035 GAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTG 88976 Query 138525 GATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTT 138583 ||| || || | |||| || | |||||| | | ||| ||||||| || | || | Sbjct 88975 GATCTTAGCCTTGACATTG-TCAATGGTGTCCGAAGGCTCGACCTCGAGGGTGATGGTCT 88917 Query 138584 TACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | || || || || || ||||| |||||||| Sbjct 88916 TGCCGGTGAGGGTCTTGACAAAGATCTGCAT 88886 >seq2517 Length=173 Score = 93.3 bits (102), Expect = 4e-14 Identities = 120/163 (74%), Gaps = 2/163 (1%) Strand=Plus/Minus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| ||||||||||||||| | ||| || |||||||||||| ||||| | | | Sbjct 162 CTCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCGAGTTGCTTACCAGCAAA 103 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATT 138541 ||| | ||||| ||||| ||||| |||||||| ||||| ||| || || | ||| Sbjct 102 GATCAATCGCTGCTGGTCAGGAGGAATACCTTCCTTGTCCTGGATCTTGGCCTTGACATT 43 Query 138542 GTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTT 138584 | || | |||||| | ||||| || |||| || | ||| || Sbjct 42 G-TCGATGGTGTCCGAGGACTCGACTTCGAGAGTGATCGTCTT 1 >seq1042 Length=313568 Score = 82.4 bits (90), Expect = 8e-11 Identities = 120/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||| ||||||| | || || ||||||||| || ||||| | | Sbjct 114669 GACTCCTTCTGGATGCTGTAGTCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTACCAGCA 114610 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| ||||| || || ||||| || ||||| ||| || || | Sbjct 114609 AAGATGAGACGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACG 114550 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGT 138590 | || | |||||||| ||||||||||| | || | || ||||| || Sbjct 114549 TTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATGGTCTTACCTGT 114500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496246606449120