Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900101485.1_202016-11-05] 2,546 sequences; 20,775,628 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq998 125 7e-24 seq2517 89.7 5e-13 seq505 84.2 2e-11 >seq998 Length=480981 Score = 125 bits (138), Expect = 7e-24 Identities = 148/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 |||||||| || || || ||||| || | |||||| ||| || ||||| || ||| Sbjct 167691 GTAGACTCCTTCTGGATGTTGTAGTCCAAAAGGGTGCGACCATCTTCGAGCTGCTTACCA 167750 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||| | ||||||||||| || || || || ||||||||| ||| || |||| Sbjct 167751 GCAAAGATGAGACGCTGCTGATCAGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTG 167810 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| |||| |||||||| | |||||| |||| ||| | ||| || || || || || Sbjct 167811 ACGTTG-TCGATGGTGTCCGAAGACTCGACCTCGAGGGTGATCGTCTTACCCGTGAGGGT 167869 Query 127096 TTTTACAAAAATCTGCAT 127113 ||| ||||| |||||||| Sbjct 167870 TTTAACAAAGATCTGCAT 167887 Score = 122 bits (134), Expect = 8e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || ||||| |||||||| | || || ||| || ||||| || ||| Sbjct 89082 GTGGACTCCTTCTGAATGTTGTAATCCGAGAGGGTACGGCCATCCTCGAGCTGCTTGCCA 89023 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||| | ||||||||||| || || ||||| ||||||||| ||| || |||| Sbjct 89022 GCGAAGATGAGACGCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTTAGCCTTG 88963 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | |||||||| | |||||| |||| ||| | || |||||||| || || Sbjct 88962 ACATTGTCAATGGTGTCCGAAGGCTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTC 88903 Query 127097 TTTACAAAAATCTGCAT 127113 || ||||| |||||||| Sbjct 88902 TTGACAAAGATCTGCAT 88886 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| || | || | || | ||| | || ||||| || || || ||||| ||| Sbjct 89343 GCACCACCACGAAGACGGAGGACAAGATGCAAAGTCGACTCCTTCTGGATGTTGTAGTCG 89284 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 | ||||| ||| || ||||| || ||||| |||| | ||||||||||| || Sbjct 89283 GAGAGGGTGCGGCCATCTTCAAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGATCAGGG 89224 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTC 127062 || || |||||||||||| || || ||||| |||| |||| |||||| | ||| Sbjct 89223 GGAATACCCTCCTTGTCCTGAATCTTGGCCTTGACGTTG-TCGATGGTGTCAGAGGACTC 89165 Query 127063 GACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| || | || | || |||||||||| ||| || || || |||||||| Sbjct 89164 GACCTCAAGAGTGATGGTCTTGCCGGTCAAAGTCTTGACGAAGATCTGCAT 89114 >seq2517 Length=173 Score = 89.7 bits (98), Expect = 5e-13 Identities = 117/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 126922 CTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTA 126981 ||| || ||||| ||||| ||| | ||||| || || || || || ||||| | Sbjct 162 CTCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCGAGTTGCTTACCAGCAAA 103 Query 126982 GATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTG 127041 ||||||||||||||| || ||||| || || ||||||||| ||| || ||||| | Sbjct 102 GATCAATCGCTGCTGGTCAGGAGGAATACCTTCCTTGTCCTGGATCTTGGCCTTGACATT 43 Query 127042 TTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083 |||| |||||||| ||||||||||| || | ||| || Sbjct 42 GTCGATGGTGTCCGAGGACTCGACTTCGAGAGTGATCGTCTT 1 >seq505 Length=37254 Score = 84.2 bits (92), Expect = 2e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 126993 GCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGT 127052 |||| || ||||| || || ||||||||| ||| || ||||| | |||| ||||| Sbjct 37254 GCTGGTCAGGAGGAATACCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGT 37195 Query 127053 CCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCA 127112 ||| ||||||||||| || | ||| || ||||||||||| || || || ||||||| Sbjct 37194 CCGAGGACTCGACTTCGAGAGTGATCGTCTTACCGGTCAGAGTCTTGACGAAGATCTGCA 37135 Query 127113 T 127113 | Sbjct 37134 T 37134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475485667187040