Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900101485.1_202016-11-05] 2,546 sequences; 20,775,628 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq998 87.8 2e-12 >seq998 Length=480981 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | | || ||||| || || || ||||| || || || ||||| Sbjct 89115 ATACCACCACGGAGGCGGAGAACGAGATGAAGGGTGGACTCCTTCTGAATGTTGTAATCC 89056 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| ||| || | || || || ||| | || | || ||||| || || Sbjct 89055 GAGAGGGTACGGCCATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGG 88996 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||||||||| || || || || || |||| || | |||||| |||| |||| Sbjct 88995 GGAATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTGTCAATGGTGTCCGAAGGCTCG 88936 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || ||||| || | || |||||||| || || || ||||| || |||||| Sbjct 88935 ACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCATC 88885 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451988814998160