Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900101485.1_202016-11-05] 2,546 sequences; 20,775,628 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq1109 190 3e-43 seq1240 131 2e-25 seq1432 127 3e-24 >seq1109 Length=147467 Score = 190 bits (210), Expect = 3e-43 Identities = 888/1390 (64%), Gaps = 25/1390 (2%) Strand=Plus/Plus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 || ||||| | ||||| ||||| |||||||| ||| |||||||| || || || Sbjct 96144 TAAATGTTCGAAGTGTAGGGCTCGAAGCACTCGTTGAAGCCCAAGATCTGACTGGTCGAA 96203 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCC 116022 || |||||||||||||||| | || ||| || ||||| | ||| || Sbjct 96204 GCAGTGGGCATGGGTGCCAACAAGAGTGAGTTACGAAGACCGTGCTTGGCAATCTTAGCC 96263 Query 116023 TTGAGGGCGTCCCAGTCGTAGTTGA-GCTTTGTCTCCCCCTCCCACATATCAAACTGGAG 116081 ||||| | ||||||| || | | | | | | ||||||| ||| |||| || Sbjct 96264 TTGAGCGAAGCCCAGTCCCAGAGGTCGGAGGGAGTGACGC-CCCACATGTCATACTGAAG 96322 Query 116082 GATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAA 116141 || ||||| || ||||| || | ||||||| || | ||| | ||| ||||| Sbjct 96323 TTCTCCCTGGGAAGCGGGCGAACCTTGGTATGTCTCGTAGGTGCCGTGCTCCTGAGCCAA 96382 Query 116142 TTCGGA-GCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTG 116200 ||| | | |||| ||||| || |||||||| || ||||| || || | | |||| Sbjct 96383 CTCGCACGATCGC-TCGAGAGCGGCGTGATAGATGGTCTCGAAGATCTGCACGTTCAAAC 96441 Query 116201 CCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGACCTT 116260 ||||| ||| || || || || | || ||| |||| |||||||| | Sbjct 96442 GACGCGCCTCAGGGGACTCGAAGGCATAACCCATGATCATGAATGCATCGGCGAGACCCT 96501 Query 116261 GGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGAT 116320 | ||||||| || || || || || | ||| || || ||||| || ||||| | Sbjct 96502 GAACACCGATACCGATGGGACGGTGACGCATGTTGGATCGACGAGCTTCTTCAACGGGGT 96561 Query 116321 AAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAA 116380 | | || | ||||| | | | || | || ||| || | || | || ||||| | Sbjct 96562 AGTAGTTGATGTCGATGATCTTGTTCAAGTTCTTGCAGATGGCTTTGGCGACCTCATGCA 96621 Query 116381 GCTTTTCGTAATCAAA-ACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGAC 116439 | | | |||| | || | || | | || | | || |||||||| || Sbjct 96622 GACGCTTGAAATCGTAGACCTTG-GTAACAGGGTCGATGAAGGTGGGGAGGGCGATGGAG 96680 Query 116440 GCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAA 116499 |||| || || |||| | |||||| ||| |||||| || ||||| || || | Sbjct 96681 GCCAAGTTGCAGACAGCGACCTCATCGGGGGCAGAGTACTCGATGATTTCGGTGCAGAGG 96740 Query 116500 TTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTG 116559 || || | ||| ||||| || | |||||| || || ||||| |||| || |||||| Sbjct 96741 TTGGAGCACTTGATGGTACCGAGGTTCTTCTGGTTGGACTTGCGGTTAGCAGCGTCCTTG 96800 Query 116560 TAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA-CATC 116618 ||||| || | || | || ||||| || || |||| ||| || || | ||| | | || Sbjct 96801 TAGAGGATGAAAGGATTACCGGTCTCGGTCTGAGACTCGAGGATGGCGTACCAGAGCTTC 96860 Query 116619 GGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTC 116678 | | || | || || || || ||||| ||||||| |||||| ||| Sbjct 96861 TGGGCCTTG-ACGGTTCGCTTACAGCGTCCCTCAGCCTCGTAGCGCTCGTAGAGACGCTC 96919 Query 116679 AAACTCTTCACCCACAGC-CTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACC 116737 |||||| ||| || ||| || | || || || || | || || | ||| |||| Sbjct 96920 AAACTCGTCA-CCGTAGCAGTCGGCAAGGCCGGGGCACTCGTTAGGGCACATGAGCGACC 96978 Query 116738 ATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGA 116797 | | ||| || ||| |||| |||||||||||| || |||| ||| || || |||||| Sbjct 96979 AATCGCCATTCTGCTCGACCCTCTTCATGAAGAGATCGGGGACCCAAAGAGCGTAGAAGA 97038 Query 116798 GATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGA 116857 | || || ||| |||| || | || || || ||||| || | || || | || Sbjct 97039 GCTCACGGGCACGAACTTCCTCCTTACCGTGGTTCTTGCGCAAGTCGAGGAACTCGAAGA 97098 Query 116858 TATCCGCGTGCCACGGTTCCAGGTACACCGCGATTG-AC-----CCCTTGCGACGACCAG 116911 ||||| |||||| || || | ||| | || | | || | |||| |||| Sbjct 97099 CATCCGAGTGCCAAGGCTCAATGTAGATAGCAAAGGCACCAGGACGCTTG---TTACCAC 97155 Query 116912 CCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCAT--C 116969 | |||| || || | || || ||| || || || ||||| || | |||||| | | Sbjct 97156 CTTGGTCGACGTAACGAGCAGTGTTGTTGAAGACACGGAGCATGGGCACGATACCGTTGC 97215 Query 116970 AGATTGGCCATTTGTCCCCCGAATACGAGACTTGTTGGCTCTGACATCGTGGATGTGCAT 117029 || || || || || ||| ||| | | | | | |||||||| | Sbjct 97216 TGA--CACCGTTGGTACCGGCAATGTAAGAGCCGGTACCACGAATGCAGTGGATGTTGAG 97273 Query 117030 ACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCC 117089 ||| ||||| || || ||| ||||| || || | |||| || |||||||||| Sbjct 97274 ACCGATACCACCGGCGGTCTTGGAGATCATGGCACAGGTCTTGAGGGTGTCGTAGATCCC 97333 Query 117090 ATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGT 117149 |||||||||||| |||| | | || ||||| || ||| | || || || || Sbjct 97334 GTCGATCGAGTCATCCTTCATGGTGACAAGGAAACACGACGAGAGCTGAGGGTGGGGGGT 97393 Query 117150 ACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATAC-CTTGGGACATCTTATCGT 117208 ||| ||||||||||| ||||| | || | || || ||| ||| ||||| | || Sbjct 97394 ACCGGCGTTGAAGAGCGTTGGCGAGGCAT-GAGTAAAGTACTTTTGCGACATGAGGTTGT 97452 Query 117209 AGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCATAAACA 117268 | ||||| | || |||||| | ||||||||||||| | ||| ||||| | || Sbjct 97453 ACGTCTCAATAGCACTCTCAATGTCCTGGCCGTGAATACCGACAGCGACACGCATGATCA 97512 Query 117269 TGTATTGGGG 117278 ||| ||||| Sbjct 97513 TGTGCTGGGG 97522 >seq1240 Length=316128 Score = 131 bits (144), Expect = 2e-25 Identities = 260/380 (68%), Gaps = 4/380 (1%) Strand=Plus/Minus Query 176596 CTTGAGGAGGGATGGCCAGAAGTAGTGGATCATATTGAGGATGAGACCCTTAATGTGTGA 176655 |||||| || || || |||||| || || | |||| |||||||||||| ||||| || Sbjct 142870 CTTGAGCAGCGAGGGGTAGAAGTGGTCGAGGAAGTTGATGATGAGACCCTTGATGTGCGA 142811 Query 176656 ACCATCGTTATCCGCATCCGTCATAATCATGAGCCGACCATAGCG-AAGCTCGGAAACAT 176714 |||||||| |||| ||| ||||| ||||||| | || || || ||||| | || | Sbjct 142810 ACCATCGTGATCCTGATCGGTCATGATCATGATACTGCCGTATCGCAAGCT-GCTGACGT 142752 Query 176715 CTTGATAATCCTTACCTTGTTGAAGACCCAAAATCTTCTTGAGATCATTGAACTCTTGGT 176774 | | || | ||| || || || ||||| | |||| ||||| | |||| ||| | Sbjct 142751 CGAGGTACTGCTTGCCGTGCTGCAGACCGATGATCTCCTTGATCGCTTTGATCTCGGCAT 142692 Query 176775 TTGATGTGAGTTGCGCCACTGAAGCGTCGCGGACATTTTTACACTTCCCGCGGAGAGGGA 176834 | ||| || | | || || |||||||| | ||| || || || |||| Sbjct 142691 TCTTCATGATCTGATCGTGAGTCGCTTCACGGACATTGAGAAGCTTACCACGAAGCGGGA 142632 Query 176835 ACACACCGTAGTGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGCGG 176894 | |||||||| | |||||||| ||| | |||||||| || || || | ||| |||| Sbjct 142631 AAACACCGTAATTGTCACGACCCACCTCGACAAGACCAGCCACAGCAAGCGCCTTGGCGG 142572 Query 176895 AATCACCCTCCGTCACGATGAGCGTACACTTTCCAGATTGTGCCGTC-CCCGCCTTGTTC 176953 | ||||| || || | |||||| || || | | | | | | | | || || ||||| Sbjct 142571 AGTCACCTTCGGTGAGGATGAGAGTGCA-GTCCTTGGCTTTCCTGCCACCAGCGTTGTTG 142513 Query 176954 GCATCGTCCAACTTGGGAAT 176973 ||||| || | ||||||||| Sbjct 142512 GCATCTTCAAGCTTGGGAAT 142493 >seq1432 Length=176812 Score = 127 bits (140), Expect = 3e-24 Identities = 124/160 (78%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || ||| |||||||||||||| |||||||| || || |||||| ||||| Sbjct 172889 GCAAAATCGGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTGAGACCG 172830 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 ||||||||||| |||||||| | |||||| |||| ||| ||||| ||||||||||| Sbjct 172829 GGCATGAGACCGCGCTTCTTGAGCCAGAAGATCGAGGCAAAGGAGCCTGAGAAGAAGATA 172770 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGG 127679 || || || || || |||| |||||||| || |||| Sbjct 172769 CCTTCGACGGCGGCAAAGGCAACGAGACGCTCAGCGAAGG 172730 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613487675133360