Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900101485.1_202016-11-05] 2,546 sequences; 20,775,628 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq1432 298 5e-76 seq998 123 2e-23 >seq1432 Length=176812 Score = 298 bits (330), Expect = 5e-76 Identities = 401/554 (72%), Gaps = 13/554 (2%) Strand=Plus/Minus Query 132894 GCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAA 132953 ||| ||||| ||| || | |||||||| | || ||||| |||||| ||| || | Sbjct 172893 GCAGGCAAAATCGGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTGAG 172834 Query 132954 GCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAA 133013 ||||||||||| ||||| || |||||||| || || | ||| || ||| || ||||| Sbjct 172833 ACCGGGCATGAGACCGCGCTTCTTGAGCCAGAAGATCGAGGCAAAGGAGCCTGAGAAGAA 172774 Query 133014 GACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGC 133073 || || |||||||| || || || || || ||||| |||| ||||| | ||| | | Sbjct 172773 GATACCTTCGACGGCGGCAAAGGCAACGAGACGCTCAGCGAAGGTGGCCT---TGCGGTC 172717 Query 133074 G---ATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGC 133130 | ||||| || || |||||||||||||| | |||||| || || || |||| ||| Sbjct 172716 GTTGATCCATCGAAGGGCCCATTCGGCCTTCTTCTTGACGACGGGGATAGTCTCGACGGC 172657 Query 133131 GTTCAACAAACGGAGTTTCTCTTCCGAGGAACGC--ACGTAGGTGTCGATGAGGGTCGAA 133188 || || | | | | | || | || ||| | |||||||||||||||| ||| Sbjct 172656 GTCAAAGAGAA--ACTCGCGCTGCTCGGGCTCGCGGATGTAGGTGTCGATGAGGAGCGAG 172599 Query 133189 TACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCG 133248 || |||| ||||| | ||||||||| ||| || || ||||| ||||| || || ||| Sbjct 172598 TAGGTTTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCATCGGGCTTCG 172539 Query 133249 ACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTG 133308 | |||| || || | ||| |||||||| || || ||||||||||| ||||| Sbjct 172538 GCGGCCTGGACCTCGGAACTGAAGCGCTCGACGAGGTTCTCGTTGACGATACCGTCAGAA 172479 Query 133309 GCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTT---CAAGCGC 133365 |||||||| ||||| || ||||| |||||| || |||||||||||||| | | Sbjct 172478 GCGGCGAAGAAGGCAAGGACGTGAGAGATGAAGTGACGCTCGTTGTCGTTGAGCTTGTTG 172419 Query 133366 TCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCG 133425 ||||||||| | ||||||||| ||||| | |||||| ||||||| || || |||||| Sbjct 172418 TCCCAGTCGTGAAGGTCCTTGGAGAGGTCGATTTCCTCGGCGGTCCAGAAGGAAGCCTCG 172359 Query 133426 GCTTTTTTGTACAT 133439 || || |||||||| Sbjct 172358 GCCTTCTTGTACAT 172345 >seq998 Length=480981 Score = 123 bits (136), Expect = 2e-23 Identities = 159/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || ||||| |||||||| | || |||||| || | Sbjct 89114 ATGCAGATCTTCGTCAAGACTTTGACCGGCAAGACCATCACTCTTGAGGTCGAGTCCTCT 89173 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || || | ||||| ||||| |||||| | || || Sbjct 89174 GACACCATCGACAACG-TCAAGGCCAAGATTCAGGACAAGGAGGGTATTCCCCCTGATCA 89232 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||| | || ||||| ||||| || || | ||||||||| ||||||||| Sbjct 89233 GCAGCGTCTCATCTTTGCTGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCCGACTACAA 89292 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||| ||||| |||| ||||| | || || ||| Sbjct 89293 CATCCAGAAGGAGTCGACTTTGCATCTTGTCCTCCGT 89329 Score = 114 bits (126), Expect = 1e-20 Identities = 144/195 (74%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || || || ||||| |||||||| || || |||||| |||| |||||| | Sbjct 167890 AAGATGCAGATCTTTGTTAAAACCCTCACGGGTAAGACGATCACCCTCGAGGTCGAGTCT 167831 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | |||| | | | |||| | || | || |||| ||||| || ||||||||| | || Sbjct 167830 TCGGACACCATCGACAACG-TCAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCTGA 167772 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 || ||||| ||||| | || || || ||||| || || | |||||||| ||||| Sbjct 167771 TCAGCAGCGTCTCATCTTTGCTGGTAAGCAGCTCGAAGATGGTCGCACCCTTTTGGACTA 167712 Query 38420 CAACATCCAAAAGGA 38434 ||||||||| ||||| Sbjct 167711 CAACATCCAGAAGGA 167697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500156882000640