Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900101485.1_202016-11-05] 2,546 sequences; 20,775,628 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq54 394 1e-104 seq1013 188 9e-43 seq2336 127 3e-24 >seq54 Length=31557 Score = 394 bits (436), Expect = 1e-104 Identities = 773/1137 (68%), Gaps = 8/1137 (1%) Strand=Plus/Minus Query 7022 ATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTC 7081 |||||||| ||||| | || || || || || |||||||||||||| |||| || || Sbjct 12640 ATGGCGGCCTGGACGGCGGCACCATAGGCAACGGCCTCATCGGGGTTGATCGACTTGTTG 12581 Query 7082 AGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGAT 7141 || || |||||| || | || | | | | || | || ||||| || || || Sbjct 12580 AGCTCACGACCGTTGAAGAAGTCGGTGAGGAGCTTCTGGACCTTGGGGATACGAGTGGAA 12521 Query 7142 CCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTT 7201 |||||||| | || || || | || || || ||||| ||||| || || Sbjct 12520 CCACCGACGAGGACAATCTCGTGGACGGAACCCTTGTCAATCTTGGAGTCACGGAGAACC 12461 Query 7202 TTTTCGACAGGTTCCATACATTTACG-GAACAAGTCCATACACAGTTCCTCAAAACGTGC 7260 || ||||| || || || | | || ||| | ||| || || ||||| ||||| || Sbjct 12460 TTCTCGACGGGCTCGATGG-TGTGCGAGAAGAGGTCACCGCAGAGCTCCTCGAAACGGGC 12402 Query 7261 ACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGT 7320 |||||| ||||| || ||||| || | || ||| | | ||| || || || ||||| || Sbjct 12401 ACGGGTGATGGAAGTGTAGAAGTCGATACCCTCGAAGAGCGAGTCGATCTCGATGGTGGT 12342 Query 7321 TTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAG 7380 || || | ||| || | || ||||| || |||||||| || || || | ||| ||||| Sbjct 12341 CTGGGCAGCCGACGAGAGAGTGCGCTTAGCACGCTCACATGCGGTGCGGAGACGTCGAAG 12282 Query 7381 GGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTG 7440 ||||| | ||| || | || ||||| | || || || ||||| | |||||| Sbjct 12281 AGCACGAGCGTTGGTGGTCAAGTCCTTCTTGTTCTTGCGCTTGAACTCCTGGACGAAGTG 12222 Query 7441 TCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTT 7500 | ||| | ||||| || |||||||| | ||| || || || ||||| || || Sbjct 12221 GTTGACGAGACGGTTGTCGAAGTCCTCACCACCAAGGTGAGTGTCACCAGCGGTGGCCTT 12162 Query 7501 GACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAG 7560 ||| || |||||||| | ||||| | | | ||||||||| || ||||| || || || Sbjct 12161 GACCTCGAAGATACCCTCCTCAATTGTAAGGAGCGAAACATCGAAGGTACCTCCTCCGAG 12102 Query 7561 GTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGC 7620 || || ||||| |||||| | || | || | ||||| ||||||||||| ||||| || Sbjct 12101 ATCGAAGATGAGAACGTTCTTCTCACCTTCGGTCTTCTTGTCGAGACCGTAAGCGATGGC 12042 Query 7621 CGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATC 7680 || || || || |||||||||||||| | | ||| || || | ||| | | ||||| Sbjct 12041 GGCAGCAGTAGGCTCATTAATAATACGCATAACGTTGAGACCCGAAATGATACCGGCATC 11982 Query 7681 TTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGT 7740 || || || || || || || ||||| ||||| || ||||| || ||||| || ||| | Sbjct 11981 CTTGGTAGCCTGACGCTGAGAGTCGTTGAAGTAAGCGGGGACAGTGACGACGGCATCCTT 11922 Query 7741 GACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGA 7800 ||| | |||||| || | || ||| | || ||| ||| |||||||| || || Sbjct 11921 GACGGTTCCACCGAGGTAGGCCTCGGCGGTCTCACGCATCTTGAGGAGAACCATGGAGGA 11862 Query 7801 AATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTT 7860 | ||||| | | || ||| | ||||| || | || | ||| |||| | Sbjct 11861 GACTTCTTCGGGAGTGAAGACCTTCTTCTCACCCTTGTACTCGATGCGGATC-TGGGGCT 11803 Query 7861 ATCCGCAGCACCGGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTG 7920 |||| | | || ||||| | | ||| | ||||| || || |||| Sbjct 11802 TGCCGC--CGGTGTTGACAACCTCGAAAGGCCAGTGCTTCATGTCAGACTGAACCTCGGC 11745 Query 7921 GTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCAT 7980 || |||||| | || ||||||||||| ||||| || || ||||| | ||||||||| Sbjct 11744 ATCGTCAAACTTGCGGCCAATAAGACGCTTGGCATCGAAGACGGTGTTGTGGGGGTTCAT 11685 Query 7981 GGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGAC 8040 || |||||||| || || || ||||| |||||||| || || || ||||| Sbjct 11684 AGCGACCTGGTTCTTGGCGGCATCTCCGATGAGACGTTC---CGAGTCGGTGAAGGCGAC 11628 Query 8041 GTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTG 8100 ||| || ||||| || || || || |||||||| ||||| | || || ||||| || || Sbjct 11627 GTATGAGGGGGTAGTGCGGTTACCCTGGTCGTTGGCAATGACCTCGACACGGTCATTCTG 11568 Query 8101 CCAGACGCCGACGCACGAATACGTTGTTCCTAAATCAATACCGATTGCTTGAGTCAT 8157 ||||||| | || || || || || || || | ||| |||||||| || | ||||| Sbjct 11567 CCAGACGGCAACACAGGAGTAGGTAGTACCGAGATCGATACCGATGGCCTTGGTCAT 11511 >seq1013 Length=76640 Score = 188 bits (208), Expect = 9e-43 Identities = 465/695 (67%), Gaps = 24/695 (3%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || |||||||| | ||| || || || ||||| || || || |||| ||| Sbjct 11742 TCGAAGTCCTCACCACCAAGGTGAGTGTCACCAGCGGTTGCAAGCACCTCGAAGACACCA 11801 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 ||||| | | ||||||||| || ||||| ||||| || || | | || | Sbjct 11802 GAGTCAATCGAGAGGAGCGAAACATCGAAGGTACCTCCACCAAGATCGTAGACGATGATC 11861 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 | | ||| |||| || ||| || |||||||| |||||||| || || || || || Sbjct 11862 TGAGACTCGCCGTCCTT---CTTGTCAAGACCGTAAGCGATAGCGGCAGCGGTAGGCTCG 11918 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 |||| ||||| ||| ||| ||||| || || || | || || || || || ||||| Sbjct 11919 TTAACGATACGGAGAACGTTGAGGCCGGCGATGGTACCAGCGTCCTTGGTGGCCTGTCGC 11978 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 || | ||||| ||||| || ||||| || || || |||| ||||| || | ||| || Sbjct 11979 TGAGCGTCGTTGAAGTAAGCGGGGACGGTGACAACGGCGTGGGTGACCTTGTGACCAAGG 12038 Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCA 7816 || | || ||| | || ||||| || ||| ||||| | || | ||| |||| | Sbjct 12039 TAGGCCTCGGCGGTCTCCTTCATCTTCTGAAGGACCATGGCAGAGACCTCCTCAGGAGTG 12098 Query 7817 AACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAG---CACCG 7873 || ||| |||||||||| | ||| | ||| |||||| || || || Sbjct 12099 AAGACCTTCTTTTCACCGTTGACGGTAACCTGAATGGCGGGTTTGCCCTTCTTCTCAACG 12158 Query 7874 GGGATAACCTTATACGACCAATCTTTCATATCGTCTTG-GACCTGT-TGGTCCGAAAACT 7931 | | | | | | | || | | | ||||| || | | | | || | || Sbjct 12159 AGCTTGAAGGGA-AGGTGC---CTGGCGTC-CTTCTTGAGATCGGACTCGCCCCA---CT 12210 Query 7932 TTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGT 7991 | | || || |||||||| || ||||| | ||||||| |||||| ||| | ||||| Sbjct 12211 TGCGACCAATGAGACGCTTGGCGTCAAAGATGGTGTTTTCGGGGTTTTGGGCGGCTTGGT 12270 Query 7992 TCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGG 8051 |||| || ||||| |||| |||||| || | || || ||||||||||| |||| Sbjct 12271 TCTTGGCGGCGTCTCCGACAAGACGCTCGGGA------GTGAAGGCGACGTACGAGGGGG 12324 Query 8052 TCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGA-CGCCG 8110 | |||| || ||||||||||| | || ||||| |||||| || || || || | || Sbjct 12325 TGATTCGGTTACCTTGGTCGTTGGTGATGATTTCAACGCGGCCG-TTGACCTGAGCACCA 12383 Query 8111 ACGCACGAATACGTTGTTCCTAAATCAATACCGAT 8145 || ||||| || || ||||| | ||| ||||| || Sbjct 12384 ACACACGAGTAGGTAGTTCCGAGATCGATACCAAT 12418 >seq2336 Length=30357 Score = 127 bits (140), Expect = 3e-24 Identities = 303/455 (67%), Gaps = 6/455 (1%) Strand=Plus/Minus Query 7676 GCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCG 7735 ||||| || || || | || ||||| ||||| |||||||| ||||| || | ||| || Sbjct 12845 GCATCCTTGGTGGCGAGACGCTGCGAGTCGTTGAAGTAGGCGGGGACAGTGATGACAGCC 12786 Query 7736 TCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATC 7795 | | |||| | ||| |||| | | || ||||| || ||||| |||||||| ||||| Sbjct 12785 TTCTTGACCTCCTTGCCGATCTTGGCCTCGGCGATCTCCTTCATCTTGGTAAGGACCATG 12726 Query 7796 GATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATG 7855 || || ||||| | | | ||||| || || |||||| | | || ||||| | | Sbjct 12725 GAGGAGATCTCCTGGGGGGAGAACTGCTTGGTCTCACCGAGGTAGTTGACCTCAATGAAG 12666 Query 7856 GGTTTATCCGCAGCACCGGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACC 7915 || | ||| | | || || | | | ||| | | ||| || | | ||| Sbjct 12665 GGAG-AGCCGT--CCTTGTCAATGACGGTGAAGGGCCAGTGCTGCATGTCCTTCTTGACG 12609 Query 7916 TGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGG 7975 | |||| | | ||||| |||||||| || || || || || | |||||| Sbjct 12608 TCAGGGTCATCGTATCGGCGACCGATGAGACGCTTGGCGTCGAAGACGGTCTGCTTGGGG 12549 Query 7976 TTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAAC 8035 |||||||| | |||||||| || || || || || ||||| || | || || || Sbjct 12548 TTCATGGCGGCCTGGTTCTTGGCGGCATCACCAATGAGACGCTC---GCTCTCGGTGAAA 12492 Query 8036 GCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCG 8095 ||||||||||| |||||||| || || || || ||||| || || || || || || ||| Sbjct 12491 GCGACGTACGAAGGGGTCGTGCGGTTACCCTGATCGTTGGCGATGATCTCGACACGCTCG 12432 Query 8096 TTTTGCCAGACGCCGACGCACGAATACGTTGTTCC 8130 || ||| || ||||| || || || || || Sbjct 12431 TTGACCCACCAACCAACGCAGGAGTAGGTGGTACC 12397 Score = 123 bits (136), Expect = 3e-23 Identities = 273/409 (67%), Gaps = 8/409 (2%) Strand=Plus/Minus Query 7246 TTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATC 7305 |||||| ||||| |||||||| ||| | | ||| ||||| || | | | | || || Sbjct 13667 TTCCTCGAAACGAGCACGGGTGATGTTGGCCTGGAAGTCAACACCCTGGAAGAGAGAGTC 13608 Query 7306 AATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGT 7365 | || | ||| || || | ||| |||| || ||||| || |||||||| || | Sbjct 13607 GACCTCGACGGTGGTCTGGGTAACCGACGATAGAGTGCGCTTAGCACGCTCACAGGCGGA 13548 Query 7366 TCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAA 7425 || | |||||| ||||| | | ||| || || || ||| | || || | ||| Sbjct 13547 ACGGAGACGACGGGTAGCACGGGCATCACCAGAGATGTCGAGCTTGTTCTTGCGCTCAAA 13488 Query 7426 CTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATC 7485 ||| | |||||| |||||| | || || || |||||||| | ||| || || Sbjct 13487 CTCCTTCTTGAAGTGGTCAAGGAGGGTGTTGTCAAAGTCCTCACCACCAAGGTGGGTGTC 13428 Query 7486 CCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAA 7545 || ||||| || ||||| | |||| ||| || ||||| | | |||||||||||| Sbjct 13427 ACCAGCGGTGGCCTTGACGGCGAAGACACCGCCAGTGATGTTAAGGAGCGAAACATCAAA 13368 Query 7546 CGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATC----GTCGTCTTTGTTCTTAT 7601 || || || || || || | ||||| |||||| | || | || ||| | | Sbjct 13367 GGTTCCTCCTCCGAGATCGTAGATGAGCACGTTCTTCTCGGTGGACGACTTGG----AGT 13312 Query 7602 CGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAG 7650 |||||||||| ||||| || || || || || || || || ||||| || Sbjct 13311 CGAGACCGTAGGCGATGGCGGCGGCGGTGGGCTCGTTGATGATACGGAG 13263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635112586898640