Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900101485.1_202016-11-05] 2,546 sequences; 20,775,628 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq1109 242 4e-59 seq1379 113 5e-20 >seq1109 Length=147467 Score = 242 bits (268), Expect = 4e-59 Identities = 1052/1645 (64%), Gaps = 53/1645 (3%) Strand=Plus/Plus Query 109506 CGACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGTCGATGATACACTTTTG 109565 |||||| ||||| ||||| ||| ||||| || |||||||||||||| ||| || Sbjct 95897 CGACTGCGACTGGCAAATGAAAGCACCTCGATCGGCGGCCATGTCGATGATGGCCTTCTG 95956 Query 109566 GCTAATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTT 109625 || ||||||||||||||||| | ||||||||| ||||| || | || ||| Sbjct 95957 CGAGATCTCCCAGACAGTCTTGTAGAGCTTCTTGATACGGTCGGGGATACCGGGGACGTT 96016 Query 109626 TTGAATAGAGCCACCAGCCTTCACCATGA---GATCCTTCATCTCTTTCGA-CCAGAGAC 109681 ||| || ||||| || | | |||| | | ||||| | | ||| ||| || | Sbjct 96017 TTGGATGGAGCCG---GCGTGAGCGATGATTCGGTTTTTCAT-TGTGTCGTTCCAAAGTC 96072 Query 109682 ------CGACCTTTTTGAGATCGTCAACAAGATGCTTGTTGACCACGACAAATTCACCAG 109735 ||||| | | | |||| || | ||||| || |||||||||| Sbjct 96073 TCTGTTCGACCAACTCGCGGAG--CAACCAGGGG----TTGACGACCTGGAATTCACCAG 96126 Query 109736 CAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTA 109795 ||||| || || ||| ||||| | |||||||| ||||| ||||| ||| ||| | Sbjct 96127 CAAGTACACGACGAGAGTAAATGTTCGAAGTGTAGGGCTCGAAGCACTCGTTGAAGCCCA 96186 Query 109796 GGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTG--TTTCGGAGACC 109853 ||| || || ||||| ||||||||||| |||| | |||| || || || ||||| Sbjct 96187 AGATCTGACTGGTCGAAGCAGTGGGCATGGGTGCCA--ACAAGAGTGAGTTACGAAGACC 96244 Query 109854 CTTCGTCTTTACCCGCTCACGCATTGCGT----CCCAATCATAACGACCACTAAATTTAG 109909 | | || | || | || ||| | |||| || | | | | || Sbjct 96245 GTGC---TTGGCAATCTTA-GCCTTGAGCGAAGCCCAGTCCCAGAGGTCGG---AGGGAG 96297 Query 109910 TCTCACCATCCCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAAC 109969 | | || |||||| || |||||| | |||| | ||| || ||||| | | | Sbjct 96298 TGACGCC---CCACATGTCATACTGAAGTTCTCCCTGGGAAGCGGGCGAACCTTGGTATG 96354 Query 109970 TCTCGTACGACCCCTCAACCTCGGCCAACTCGGATGAAGCCTCTAGTGCCGCATGATACA 110029 ||||||| | || | ||| ||||||||| | || ||| || || || ||||| | Sbjct 96355 TCTCGTAGGTGCCGTGCTCCTGAGCCAACTCGCACGATCGCTCGAGAGCGGCGTGATAGA 96414 Query 110030 TAGTCTCAAAAATATGAGCATTCATGAGGCGAGACTCTTCACAGTCGAAGGGAAGACCAC 110089 | ||||| || || || | |||| | || | ||| | ||||||| | ||| Sbjct 96415 TGGTCTCGAAGATCTGCACGTTCAAACGACGCGCCTCAGGGGACTCGAAGGCATAACCCA 96474 Query 110090 AAAGAATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGT 110149 | || || |||| || |||||||||||||||| ||| ||||| || || ||||| Sbjct 96475 TGATCATGAATGCATCGGCGAGACCCTGAACACCGATACCGATGGGACGGTGACGCATGT 96534 Query 110150 TAGAGCGTCGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCT 110209 | || || ||||| ||| |||||||| ||||| |||||||| | || | |||| Sbjct 96535 TGGATCGACGAGCTTCTTCAACGGGGTAGTAGTTGATGTCGATGATCTTGTTCAAGTTCT 96594 Query 110210 TCGTCACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTAT 110269 | | | || | || ||||| || | | ||||| | || || | | Sbjct 96595 TGCAGATGGCTTTGGCGACCTCATGCAGACGCTTGAAATCGTAGACCTTGGTAACAGGGT 96654 Query 110270 TGACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGG 110329 || | ||||||| || || || || | ||||| |||| ||| || | | | Sbjct 96655 CGATGAAGGTGGGGAGGGCGATGGAGGCCAAGTTGCAGACAGCGACCTCATCGGGGGCAG 96714 Query 110330 TGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGAT 110389 ||| || | ||||| || || | |||||| | ||| ||| ||| | ||||||||| | Sbjct 96715 AGTACTCGATGATTTCGGTGCAGAGGTTGGAGCACTTGATGGTACCGAGGTTCTTCTGGT 96774 Query 110390 TCGATTTGGAGTT-GCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGT 110448 | || ||| ||| ||| || ||||| ||||| ||| | || |||| || || ||||| Sbjct 96775 TGGACTTGCGGTTAGCA-GCGTCCTTGTAGAGGATGAAAGGATTACCGGTCTCGGTCTGA 96833 Query 110449 GACTTGAGAATGGCCTTCCATA-CATCGGCGGCGGGGACAGTTGCGTTAGCGAGACCTTC 110507 |||| ||| ||||| | ||| | | || | ||| ||| ||| ||| | | || || Sbjct 96834 GACTCGAGGATGGCGTACCAGAGCTTCTG-GGCCTTGACGGTTCGCTTACAGCGTCCCTC 96892 Query 110508 CTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTT 110567 ||||||| ||| | |||||| || | ||||| || | ||| || Sbjct 96893 AGCCTCGTAGCGCTCGTAGAGACGCTCAAACTCGTCACCGTAGCAGTCGGCAAGGCCGGG 96952 Query 110568 CGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAG 110627 || || || || | ||| ||||||| ||| || ||| |||||||||||||| || Sbjct 96953 GCACTCGTTAGGGCACATGAGCGACCAATCGCCATTCTGCTCGACCCTCTTCATGAAGAG 97012 Query 110628 GTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTT 110687 || || | ||| | || |||| || |||||| |||| | || || | ||| ||||| Sbjct 97013 ATCGGGGACCCAAAGAGCGTAGAAGAGCTCACGGGCACGAACTTCCTCCTTACCGTGGTT 97072 Query 110688 GAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGAT 110747 ||| | || | || || | || |||||||||||| || || | |||| ||| | Sbjct 97073 CTTGCGCAAGTCGAGGAACTCGAAGACATCCGAGTGCCAAGGCTCAATGTAGATAGCAAA 97132 Query 110748 GGATCCCTTACGACG------ACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGAC 110801 || || | |||| ||| | |||| || || || || ||| |||||||| Sbjct 97133 GGCACC---AGGACGCTTGTTACCACCTTGGTCGACGTAACGAGCAGTGTTGTTGAAGAC 97189 Query 110802 CCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATT 110861 | |||||| || | || || | | ||| || ||||| ||| || | Sbjct 97190 ACGGAGCATGGGCACGATACCGTTGCTGACACCGTTGGTACCGGCAATGTAAGAGCCGGT 97249 Query 110862 GGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACA 110921 |||||||| |||||| | | ||| |||||||| || ||| || ||||| Sbjct 97250 ACCACGAATGCAGTGGATGTTGAGACCGATACCACCGGCGGTCTTGGAGATCATGGCACA 97309 Query 110922 -CTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGC 110980 ||| |||| || | || || || || ||||| || |||| ||| | || || | Sbjct 97310 GGTCT-TGAGGGTGTCGTAGATCCCGTCGATCGAGTCATCCTTCATGGTGACAAGGAAAC 97368 Query 110981 AAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGA 111040 | || || | |||||| | || || || || |||||||| || || | |||||| | | Sbjct 97369 ACGACGAGAGCTGAGGGTGGGGGGTACCGGCGTTGAAGAGCGTTGGCGAGGCATGAGTAA 97428 Query 111041 ACAGACCTTGGGACATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATCTTTACCGTGAA 111100 | ||| ||||| |||||| || || | || | || | ||||||| Sbjct 97429 AGTACTTTTGCGACATGAGGTTGTACGTCTCAATAGCACTCTCAATGTCCTGGCCGTGAA 97488 Query 111101 TACCAATGGCAACTCGCATGAACAT 111125 |||| | || || ||||||| ||| Sbjct 97489 TACCGACAGCGACACGCATGATCAT 97513 >seq1379 Length=397549 Score = 113 bits (124), Expect = 5e-20 Identities = 325/489 (66%), Gaps = 17/489 (3%) Strand=Plus/Plus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 |||||||||||||| || || | | |||| ||||||| | ||| ||||| ||| | Sbjct 128341 CGATCGAAACGACCAGGACGCATCAAAGCAGCATCAAGCACATCCGGTCGGTTAGTACCA 128400 Query 11563 GCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622 |||| || || | | ||| || |||| |||||||| | | | || ||| Sbjct 128401 GCAAGCACAACGACGTGCTCCTCGGTGCCGAAGCCGTCCATCTGCACCAACAACTCGTTC 128460 Query 11623 ATCGTCTGTTCACGCTCATCGTTGGAGGGCA---TACCACC--TGCCGAACGCTTCTTAC 11677 | |||| || ||||||||||| | | || || | || ||| |||||| Sbjct 128461 AGCGTCGACTCTCGCTCATCGTTACCACCAAAGTTGCCTCCCTTTCC--ACGGCTCTTAC 128518 Query 11678 CGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGA 11737 | | ||| || |||||||| ||||| | ||| || || || | | || | ||| | Sbjct 128519 CAATAGCATCGATCTCATCAATGAAGATGATGCAAGGAGCGT-GCTTCTTGGC-GTTGGC 128576 Query 11738 AAAGTT--CACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGC 11795 ||| | | || ||||| | | || ||||| ||||||||||| || || | | | Sbjct 128577 AAACATGTCTCGGACACGGCTTGGACCGACACCGACGAACATCTCTACAAACTCGGACCC 128636 Query 11796 AGAACACTGA-ATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCT 11854 |||| || || | ||| || ||| || |||||| || | || || || | |||| Sbjct 128637 AGAA-ACGGACAAGAATGGCACACCAGCCTCACCGGCAGTAGCCTTGGCTAGCAAGGTCT 128695 Query 11855 TACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCA--CTTCC 11912 |||| ||||| || | ||| | ||||| ||| ||||| || |||||||| || |||| Sbjct 128696 TACCGGTACCGGGAGGACCGGAGAGAATGGCACCACGAGGAATCTTGGCGCCGAGCTTCT 128755 Query 11913 AAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGCGGA 11972 ||| || |||||||||||||||| |||| |||| | || |||||||| Sbjct 128756 T--GTACTTTTCGGGCTTCTTGAGGAAGTTGACAAACTCCATGATCTCTTCCTTGGCCTC 128813 Query 11973 GTCGATACC 11981 ||| ||||| Sbjct 128814 GTCCATACC 128822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588957255838800