Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900101485.1_202016-11-05] 2,546 sequences; 20,775,628 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq1109 217 2e-51 seq1432 96.9 4e-15 >seq1109 Length=147467 Score = 217 bits (240), Expect = 2e-51 Identities = 903/1400 (65%), Gaps = 45/1400 (3%) Strand=Plus/Plus Query 105935 TAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAG 105994 || ||||||| |||||||| || ||||| || || |||||||| || ||| || Sbjct 96144 TAAATGTTCGAAGTGTAGGGCTCGAAGCACTCGTTGAAGCCCAAGATCTGACTGGTCGAA 96203 Query 105995 GCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTG---ATGCGT 106051 || || ||||| ||||||| ||| || |||||||||||| | |||| || Sbjct 96204 GCAGTGGGCATGGGTGCCAACAAGAGTGAGTTACGAAGACCGTG---CTTGGCAATCTTA 96260 Query 106052 TCCTTGAGAACATCCCAGTCGTAGTTGA-GCTTGGTTTCACCTTCCCACATATCAAATTG 106110 ||||||| | ||||||| || | | || | || ||||||| ||| | || Sbjct 96261 GCCTTGAGCGAAGCCCAGTCCCAGAGGTCGGAGGGAGTGACGC-CCCACATGTCATACTG 96319 Query 106111 AAGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGC 106170 ||| | || ||||| | ||| ||||| | ||||||| |||| || || | | ||| Sbjct 96320 AAGTTCTCCCTGGGAAGCGGGCGAACCTTGGTATGTCTCGTAGGTGCCGTGCTCCTGAGC 96379 Query 106171 CAATTCACA-GCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCA 106229 ||| || || | |||| || || | |||||||| ||||| || ||||| | | |||| Sbjct 96380 CAACTCGCACGATCGC-TCGAGAGCGGCGTGATAGATGGTCTCGAAGATCTGCACGTTCA 96438 Query 106230 TCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGAC 106289 || ||| || || || || || | | || ||| |||| ||||||| Sbjct 96439 AACGACGCGCCTCAGGGGACTCGAAGGCATAACCCATGATCATGAATGCATCGGCGAGAC 96498 Query 106290 CTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGG 106349 | |||||||| | ||| || || | ||| ||||| || || || || ||||||| Sbjct 96499 CCTGAACACCGATACCGATGGGACGGTGACGCATGTTGGATCGACGAGCTTCTTCAACGG 96558 Query 106350 GATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACA-AT--CTTTGT-GATT 106405 | || | || |||| |||| ||| | || ||| || || ||||| || Sbjct 96559 GGTAGTAGTTGATGTCGATGATCTTGTTCAAGTTCTTG----CAGATGGCTTTGGCGACC 96614 Query 106406 TCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCG 106465 ||||| || | |||| | || | | || | | || |||||| Sbjct 96615 TCATGCAGACGCTTGAAATCGTAGACCTTGGTAACAGGGTCGATGAAGGTGGGGAGGGCG 96674 Query 106466 ATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTA 106525 || || ||||| ||||| ||||| |||||| | | |||||| | ||||| || Sbjct 96675 ATGGAGGCCAAGTTGCAGACAGCGACCTCATCGGGGGCAGAGTACTCGATGATTTCGGTG 96734 Query 106526 CACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTT-GCACGC 106584 || | |||||| | ||| || || || | ||||| ||||| ||| ||| ||| || Sbjct 96735 CAGAGGTTGGAGCACTTGATGGTACCGAGGTTCTTCTGGTTGGACTTGCGGTTAGCA-GC 96793 Query 106585 ATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCA 106644 ||||||||||| ||| | || | || ||||| ||||| |||| ||| || || | ||| Sbjct 96794 GTCCTTGTAGAGGATGAAAGGATTACCGGTCTCGGTCTGAGACTCGAGGATGGCGTACCA 96853 Query 106645 CA-CATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGA 106703 | | || | | || | || | || |||||||| |||||||| ||||| Sbjct 96854 GAGCTTCTGGGCCTTG-ACGGTTCGCTTACAGCGTCCCTCAGCCTCGTAGCGCTCGTAGA 96912 Query 106704 GGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAA 106763 | |||||||| ||||| ||||| || || || || || || || | | Sbjct 96913 GACGCTCAAACTCGTCACCGTAGCAGTCGGCAAGGCCGGGGCACTCGTTAGGGCACATGA 96972 Query 106764 GAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATG 106823 | ||||| | ||| || ||| |||| ||||||||| || || || | ||| || | Sbjct 96973 GCGACCAATCGCCATTCTGCTCGACCCTCTTCATGAAGAGATCGGGGACCCAAAGAGCGT 97032 Query 106824 AAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACT 106883 | ||||| || | ||| | || || | ||| ||||| || || || ||||||| Sbjct 97033 AGAAGAGCTCACGGGCACGAACTTCCTCCTTACCGTGGTTCTTGCGCAAGTCGAGGAACT 97092 Query 106884 CCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC---- 106939 | | || ||||| |||||| ||||||| |||| || | | || ||||| Sbjct 97093 CGAAGACATCCGAGTGCCAAGGCTCAATGTAGATAGCAAAGGCACC---AGGACGCTTGT 97149 Query 106940 --CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATAC 106997 ||| |||| | || || || || ||| ||| || || || ||||| || | |||| Sbjct 97150 TACCACCTTGGTCGACGTAACGAGCAGTGTTGTTGAAGACACGGAGCATGGGCACGATAC 97209 Query 106998 CAT--CTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCAC--AT-CA-T 107051 | | |||| ||| || || || ||| || | | | ||| || || | Sbjct 97210 CGTTGCTGA--CACCGTTGGTACCGGCAATGTAAG----AGCCGGTACCACGAATGCAGT 97263 Query 107052 GGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTC 107111 |||||| | || ||||| || || ||| ||||| ||||| | | || || Sbjct 97264 GGATGTTGAGACCGATACCACCGGCGGTCTTGGAGATCATGGCACAGGTCTTGAGGGTGT 97323 Query 107112 CATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCG 107171 | ||||| |||| ||| ||||| ||||| ||| || |||||| || || | ||| | Sbjct 97324 CGTAGATCCCGTCGATCGAGTCATCCTTCATGGTGACAAGGAAACACGACGAGAGCTGAG 97383 Query 107172 GTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATAC-CTTGGGAC 107230 | || ||||| || |||||||| ||||| | || ||| | || ||| ||| ||| Sbjct 97384 GGTGGGGGGTACCGGCGTTGAAGAGCGTTGGCGAGGCATGAGT-AAAGTACTTTTGCGAC 97442 Query 107231 ATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACA 107290 || || ||| ||||| | || |||||||| | ||||| || |||| || ||| Sbjct 97443 ATGAGGTTGTACGTCTCAATAGCACTCTCAATGTCCTGGCCGTGAATACCGACAGCGACA 97502 Query 107291 CGCATAAACATGTATTGGGG 107310 ||||| | ||||| ||||| Sbjct 97503 CGCATGATCATGTGCTGGGG 97522 >seq1432 Length=176812 Score = 96.9 bits (106), Expect = 4e-15 Identities = 118/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 117273 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCC 117332 |||||| || ||| |||||||| || || || || || || || |||||| || || Sbjct 172890 GGCAAAATCGGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTGAGACC 172831 Query 117333 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 117392 ||||||||||| |||||||| | ||| | || | | || || || ||||||||||| Sbjct 172830 GGGCATGAGACCGCGCTTCTTGAGCCAGAAGATCGAGGCAAAGGAGCCTGAGAAGAAGAT 172771 Query 117393 ACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGG 117433 ||| || || ||||| |||| || ||||| ||||||| Sbjct 172770 ACCTTCGACGGCGGCAAAGGCAACGAGACGCTCAGCGAAGG 172730 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589962023861040