Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900101485.1_202016-11-05] 2,546 sequences; 20,775,628 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq1124 91.5 2e-13 >seq1124 Length=239697 Score = 91.5 bits (100), Expect = 2e-13 Identities = 131/182 (72%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 154933 AGATCGTTCATGACAATGGTGGTCAGGTATATCTTGATGGAGCAAATCTAAATGCACAGG 154992 ||||||| || ||||| ||||| ||||| || || || || || || || | || |||| Sbjct 181066 AGATCGTCCACGACAACGGTGGACAGGTCTACCTCGACGGTGCCAACCTTCAGGCTCAGG 181125 Query 154993 TAGGACTAGCAAAACCATGTGAGTATGG-TGCAGATGTATGTCATCTAAACTTACATAAA 155051 | | ||| | || ||| | | |||| ||| ||||| ||||| ||||| || || Sbjct 181126 TGGCACTCACCAACCCA-GCCATCATGGGTGCCGATGTGACACATCTCAACTTGCACAAG 181184 Query 155052 ACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATAGGTGTAGCAAAA 155111 || |||| || ||||| ||||||||||| || || || || ||||| |||| || || Sbjct 181185 ACTTTCTCCATCCCACACGGAGGTGGAGGACCCGGTGTGGGCCCTATCTGTGTCGCTGAA 181244 Query 155112 CA 155113 || Sbjct 181245 CA 181246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579194366552640