Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900101485.1_202016-11-05] 2,546 sequences; 20,775,628 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq1124 87.8 2e-12 >seq1124 Length=239697 Score = 87.8 bits (96), Expect = 2e-12 Identities = 130/182 (71%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 159608 AGATTGTTCATGAGAATGGTGGTCAGGTATATCTTGATGGTGCAAATCTAAATGCACAGG 159667 |||| || || || || ||||| ||||| || || || ||||| || || | || |||| Sbjct 181066 AGATCGTCCACGACAACGGTGGACAGGTCTACCTCGACGGTGCCAACCTTCAGGCTCAGG 181125 Query 159668 TAGGTCTAGCAAAACCATGTGACTATGG-TGCAGATGTATGTCATCTAAACTTACATAAG 159726 | | || | || ||| | | |||| ||| ||||| ||||| ||||| || ||| Sbjct 181126 TGGCACTCACCAACCCA-GCCATCATGGGTGCCGATGTGACACATCTCAACTTGCACAAG 181184 Query 159727 ACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGTAGCAAAA 159786 || |||| || ||||| ||||||||||| || || || || ||||| |||| || || Sbjct 181185 ACTTTCTCCATCCCACACGGAGGTGGAGGACCCGGTGTGGGCCCTATCTGTGTCGCTGAA 181244 Query 159787 CA 159788 || Sbjct 181245 CA 181246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588032485270560