Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900101485.1_202016-11-05] 2,546 sequences; 20,775,628 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq1042 141 8e-29 >seq1042 Length=313568 Score = 141 bits (156), Expect = 8e-29 Identities = 431/664 (65%), Gaps = 34/664 (5%) Strand=Plus/Plus Query 29752 TTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCC 29811 ||||| | || |||| ||||| || || | ||||||||| |||| || || || Sbjct 42020 TTTATGTTGAGCTTGGGGAAGGGCAATGGTTCACGCTCGAGCTGGATCTTGAGTGGCTCT 42079 Query 29812 ACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGC 29871 |||||||| |||||||||||||||||||| | | || | || || || Sbjct 42080 ACGTGATCTTTGTAGACGTGAGCGTCTCCCATCGAAAGCACGAGTTCCTTGGGCTCGCAA 42139 Query 29872 CCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACC 29931 | ||||| | ||| ||||| || ||||| | || ||||||||| ||||| ||||| || Sbjct 42140 TCAGTGACTTTAGCGATCATATAGGTGAGCAAAGCGTAGCTGGCAATGTTGAAGGGGACT 42199 Query 29932 CCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCT----CT-------- 29979 || | ||| | || | || | ||||| | ||||| ||||||| || Sbjct 42200 CCCAACCCGAGATCGCAGGAACGTTGGTACATTTGACAAGAGAGCTGCTTCTTGCCCCAA 42259 Query 29980 -CCGTCGC-------TC----------ACGTAAAACTGACACATGGTGTGGCACGGAGGA 30021 || | || || ||| | ||||| || | ||||||| ||||| Sbjct 42260 CCCTTTGCGTAAGCGTCGAGGTTGGAGACGAAGAACTGGCAGAACATGTGGCAAGGAGGG 42319 Query 30022 AGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCT 30081 ||||||||||| | | |||||||||||||| || | | | ||| | | || Sbjct 42320 AGAGCCATGAGAGCAAGATCTTTGGGGTTCCATGCACTGAGCAAGATCCTGCGATCGGTG 42379 Query 30082 GGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAG 30141 ||||||||| |||| ||| | | | | ||| || || || || || | |||| Sbjct 42380 GGGTTGTTCTTGATCTTGTCAATGACTTCACGCAATTGGTCAACGCCTTGACCGGTGTAG 42439 Query 30142 TCTG-CCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGG 30200 || | | || |||| |||| ||||| || || || | ||| ||||| ||||| || || Sbjct 42440 TCGGTGTCGCA-GTCCTTGTATTCTGCGCCAAAGTGTCGCCATTGGAAGCCGTAGACTGG 42498 Query 30201 TCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACC 30260 |||| || || ||| || ||| | ||| | | ||| | || |||| || || Sbjct 42499 ACCCAAATCACCTTCTCGCCGGTGTTGCAAGTCACGTGAGTCGAGGAACTCTCGCGATCC 42558 Query 30261 GTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCT 30320 ||| |||||||||| | || ||||| || | || ||||||| || || Sbjct 42559 GTTACCGTCCCAGATGTGCACGCCCTTGTCAGTAAGAAGCTTGGAGTCGGTCTTGCCAGC 42618 Query 30321 GACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAA-AAGACCCTCTTGGTCGTGAGGA 30379 || ||||| || |||||||||| || |||| ||| ||||| | ||| || ||||| | Sbjct 42619 CACAAACCAGAGGAGCTCCTCCAGTAC-GCCTCGCAAGAAGACACGCTTTGTGGTGAGCA 42677 Query 30380 GGGG 30383 | || Sbjct 42678 GAGG 42681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408604920851258