Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900101485.1_202016-11-05] 2,546 sequences; 20,775,628 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq1109 271 1e-67 seq1432 183 6e-41 >seq1109 Length=147467 Score = 271 bits (300), Expect = 1e-67 Identities = 837/1273 (66%), Gaps = 39/1273 (3%) Strand=Plus/Plus Query 221420 AGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAGAA 221479 || || ||||| ||||||||||| |||||| | ||| | | ||||| || || Sbjct 96399 AGAGCGGCGTGATAGATGGTCTCGAAGATCTGCACGTTCAAACGACGCGCCTCAGGGGAC 96458 Query 221480 GTGAAGGGCATA-CGCAGCATC-TGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGA 221537 ||||| |||| | || ||| |||| | | ||||| || ||||| || |||||||||| Sbjct 96459 TCGAAGG-CATAACCCATGATCATGAATG-CATCGGCGAGACCCTGAACACCGATACCGA 96516 Query 221538 TGGGCCTGTGTCTCCTGTTGGAAGCGGCC-GCTTCTGGCACGGGATAAAAGTTGACGTCG 221596 |||| | ||| | | ||||||| || | |||||| ||||| || |||||| |||| Sbjct 96517 TGGGACGGTGACGCATGTTGGAT-CGACGAGCTTCTTCAACGGGGTAGTAGTTGATGTCG 96575 Query 221597 ATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTG 221656 || | ||||| | |||| |||| |||| | ||||| ||| || | || | Sbjct 96576 ATGATCTTGTTCAAGTTCTTGCAGATGGCTTTGGCGACCTCATGCAGACGCTTGAAATCG 96635 Query 221657 AACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCC 221716 | ||| | || |||| | | || | | ||||| | | |||| Sbjct 96636 TAGACCT-----------TGGTAACAGGGT-CGATGAAGGTGGGGAGGGCGATGGAGGCC 96683 Query 221717 AGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTG 221776 | ||| || || || ||||| || | | |||| ||||| || || ||||||||| Sbjct 96684 AAGTTGCAGACAGCGACCTCATCGGGGGCAGAGTACTCGATGATTTCGGTGCAGAGGTTG 96743 Query 221777 CTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAG 221836 |||||||||||| || |||| || || || |||||||| || ||||||||||||||| Sbjct 96744 GAGCACTTGATGGTACCGAGGTTCTTCTGGTTGGACTTGCGGTTAGCAGCGTCCTTGTAG 96803 Query 221837 AGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAG-TTCTCT 221895 || || || ||| || ||||| ||||| | | || || || |||||| |||| Sbjct 96804 AGGATGAAAGGATTACCGGTCTCGGTCTGAGACTCGAGGATGGCGTACCAGAGCTTCT-G 96862 Query 221896 GGCGCTCACCGTCCTCTTGACTGC-ACCCTCGGTCTTTTCATACCCGGTATAGAGCATGT 221954 ||| | || || | ||| || || ||||| | | || || | ||||| | Sbjct 96863 GGCCTTGACGGTTCGCTT-ACAGCGTCCCTCAGCC---TCGTAGCGCTCGTAGAGACGCT 96918 Query 221955 CAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTCC 222014 |||||| |||||||| ||| | ||||| || ||| | || ||||| || || Sbjct 96919 CAAACTCGTCACCGTAGCAGTCGGCAAGGCCGGGGCACTCGTTAGGGCACATGAGCGACC 96978 Query 222015 AGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGA 222074 | | || | | |||||||| ||||||||| || |||| ||| || || | |||| Sbjct 96979 AATCGCCATTCTGCTCGACCCTCTTCATGAAGAGATCGGGGACCCAAAGAGCGTAGAAGA 97038 Query 222075 GATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAA 222134 | || | || || |||||| |||| ||| || | || || | ||||| || | Sbjct 97039 GCTCACGGGCACGAACTTCCTCCTTACCGTGGTTCTTGCGCAAGTCGAGGAACTCGAAGA 97098 Query 222135 TGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCT 222194 || | |||||| ||||| | |||| || | || || || |||||||| ||||| | Sbjct 97099 CATCCGAGTGCCAAGGCTCAATGTAGATAGCAAAGGCACCAGGACGCTTGTTACCACCTT 97158 Query 222195 GATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGAT 222253 | || | | | ||| | |||||||| || || | || || | |||||| Sbjct 97159 GGTCGA-CGTAACGAGCAGTGTTGTTGAAGACACGGAGCATGGGCACGATACCGTTGCTG 97217 Query 222254 CGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAG-ACATGCC 222312 ||||||||| || |||||| | ||| | | | | | ||| | | || Sbjct 97218 ACACCGTTGGTACCGGCAATGTAAGAGCCGGTACCACGAATG-CAGTGGATGTTGAGACC 97276 Query 222313 GATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTC 222372 ||||||||||||| || ||||||||||| ||| ||||||| ||||| ||| || || Sbjct 97277 GATACCACCGGCGGTCTTGGAGATCATGGCACAGGTCTTGAGGGTGTCGTAGATCCCGTC 97336 Query 222373 CATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGAACA 222432 || ||||| ||||| | | | | || ||||| ||||| | ||||| | || || || Sbjct 97337 GATCGAGTCATCCTTCATGGTGACAAGGAAACACGACGAGAGCTGAGGGTGGGGGGTACC 97396 Query 222433 GGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCGTACGT 222492 |||||| || ||||| || ||| || |||||||| ||||| || | |||||| Sbjct 97397 GGCGTTGAAGAGCGTTGGCGAGGCATGAGTAAAGTACTTTTGCGACATGAGGTTGTACGT 97456 Query 222493 CTC--TACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCATGTACATG 222550 ||| || ||||| | |||| | |||||||| | ||| | |||| |||| Sbjct 97457 CTCAATAGCACTCT--CAATGTCCTGGCCGTGAATACCGACAGCGACACGCATGATCATG 97514 Query 222551 TACTGGGGCCTCTCCACAGGACCCTTGGAGCTG---GAGAGCAGGTACGATTTTTCCAGA 222607 | |||||| | || ||| ||||| | || ||||| ||| ||| || || Sbjct 97515 TGCTGGGGACGCT---CAGCGACCTTGCCGTTGATACGGAGCAAGTAGGATCGCTCGAGG 97571 Query 222608 GTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACGGCGGCGTCCAGC 222667 |||||||| || ||| ||||| || ||||| | ||| | | ||| | ||| ||| Sbjct 97572 GTCTTGAAACCGAAGAAGTTGTAGTGGAAGTCGCGCTCGTAGATGATGGCCGAGTCGAGC 97631 Query 222668 TCCGACTTGTGCT 222680 | |||||||| Sbjct 97632 TGGTCCTTGTGCT 97644 >seq1432 Length=176812 Score = 183 bits (202), Expect = 6e-41 Identities = 436/655 (67%), Gaps = 22/655 (3%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| | |||||||||||||| | || |||||||||||| || || || || Sbjct 172336 ATCTGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGACCGCCGAGGAAATCGACCTC 172395 Query 25537 GCCAAGGACATGGACGGCTGGTAC-----GCTCTATCCAAAGACGAGCAGCATTTTCTCA 25591 |||||||| | ||| |||| || |||| | | | |||||| || || || Sbjct 172396 TCCAAGGACCTTCACGACTGGGACAACAAGCTCAA--CGACAACGAGCGTCACTTCATCT 172453 Query 25592 AGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGA 25651 |||| | || ||||| || || ||||| ||||| || |||||||| || |||| Sbjct 172454 CTCACGTCCTTGCCTTCTTCGCCGCTTCTGACGGTATCGTCAACGAGAACCTCGTCGAGC 172513 Query 25652 GATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCA 25711 | |||| || || ||| || || ||| || ||||||||||||||||| | Sbjct 172514 GCTTCAGTTCCGAGGTCCAGGCCGCCGAAGCCCGATGCTTCTACGGTTTCCAGATCATGA 172573 Query 25712 TCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGACG 25768 | || || | ||||| || || | ||| || || || ||||| || Sbjct 172574 TGGAGAACATCCACTCCGAAACCTACTC---GCTCCTCATCGACACCTACATCCGCGAGC 172630 Query 25769 TCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGG 25828 || || | || || |||| ||| ||||| || ||| | |||||| ||||| Sbjct 172631 CCGAGCAGCGCGAGTTTCTCTTTGACGCCGTCGAGACTATCCCCGTCGTCAAGAAGAAGG 172690 Query 25829 CGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAG 25888 | |||||| | ||||||||| || | || || || | ||||| || || | Sbjct 172691 CCGAATGGGCCCTTCGATGGATCAACGACCGCAAGGCCACCTTCGCTGAGCGTCTCGTTG 172750 Query 25889 CCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCA 25948 ||||||| || || || || ||||| ||| || || ||||| | ||||||||||||| Sbjct 172751 CCTTTGCCGCCGTCGAAGGTATCTTCTTCTCAGGCTCCTTTGCCTCGATCTTCTGGCTCA 172810 Query 25949 AGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGG 26008 || || || ||||||||| || ||| ||||||||||||||| | ||||||| Sbjct 172811 AGAAGCGCGGTCTCATGCCCGGTCTCACCTTCTCCAACGAGCTCATCTCTCGTGACGAGG 172870 Query 26009 GTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTC 26068 |||| |||| |||||||||||||| |||| || ||||| ||| | || | | | Sbjct 172871 GTCTTCACACCGATTTTGCCTGCCTCCTCTTCA---GCCAC---CTCAAGAAGCGCGCGC 172924 Query 26069 A---AGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTT 26120 | || |||||| || ||||| ||||| || || ||||||| ||||| Sbjct 172925 ACCCCGACACCGTCCTCAAGATCATTTCCGAGGCGGTCGAAATCGAGATCGAGTT 172979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928815239514240