Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900101485.1_202016-11-05] 2,546 sequences; 20,775,628 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq54 134 9e-26 seq998 100 2e-15 >seq54 Length=31557 Score = 134 bits (148), Expect = 9e-26 Identities = 364/551 (66%), Gaps = 6/551 (1%) Strand=Plus/Plus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 || || ||||| ||| | || ||||| ||| ||||| || || ||||| |||| Sbjct 11520 GCCATCGGTATCGATCTCGGTACTACCTACTCCTGTGTTGCCGTCTGGCAGAATGACCGT 11579 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || || | |||||||| ||||| ||||| | || || || ||||| || | || || Sbjct 11580 GTCGAGGTCATTGCCAACGACCAGGGTAACCGCACTACCCCCTCATACGTCGCCTTCACC 11639 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAAT 474508 || | |||| ||| || |||||||| || || | || | || || || || Sbjct 11640 GACTCGGAACGTCTCATCGGAGATGCCGCCAAGAACCAGGTCGCTATGAACCCCCACAAC 11699 Query 474509 ACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCT 474568 || | || ||||| || | | ||||| || || ||||| ||| || || || ||| Sbjct 11700 ACCGTCTTCGATGCCAAGCGTCTTATTGGCCGCAAGTTTGACGATGCCGAGGTTCAGTCT 11759 Query 474569 GATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATA-GAAGC 474627 || ||| || |||||||| |||| | || || || || || | || | | | Sbjct 11760 GACATGAAGCACTGGCCTTTCGAGGTTGTCAACACCGGCGGCAAGCCCCAGATCCGCATC 11819 Query 474628 AA-TACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAG 474686 | |||| | ||||| | || || | || ||| || | || || |||||| | Sbjct 11820 GAGTACAAG--GGTGAGAAGAAGGTCTTCACTCCCGAAGAAGTCTCCTCCATGGTTCTCC 11877 Query 474687 CCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATT 474745 ||| ||| | ||||| ||| | || || || | || | ||||| || | Sbjct 11878 TCAAGATGCGTGAGACCGCCGAGGCC-TACCTCGGTGGAACCGTCAAGGATGCCGTCGTC 11936 Query 474746 ACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATT 474805 ||||| || || || || || || ||||| ||||| || || || ||||| || | ||| Sbjct 11937 ACTGTCCCCGCTTACTTCAACGACTCTCAGCGTCAGGCTACCAAGGATGCCGGTATCATT 11996 Query 474806 GCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGT 474865 | ||||| || ||| | |||||||||||||| || || || ||||| | ||||| ||| Sbjct 11997 TCGGGTCTCAACGTTATGCGTATTATTAATGAGCCTACTGCTGCCGCCATCGCTTACGGT 12056 Query 474866 CTTGATAAGAA 474876 || || ||||| Sbjct 12057 CTCGACAAGAA 12067 >seq998 Length=480981 Score = 100 bits (110), Expect = 2e-15 Identities = 156/221 (71%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATG--AAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGA 480608 |||||||||||| |||||||| |||| || || || | || || || | || Sbjct 89335 ACGAAGACGGAGGACAAGATGCAAAGTCGAC--TCCTTCTGGATGTTGTAGTCGGAGAGG 89278 Query 480609 GTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATT 480668 || | | ||||||||| ||||| |||||||| || ||||| || |||||||| ||||| Sbjct 89277 GTGCGGCCATCTTCAAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGATCAGGGGGAATA 89218 Query 480669 CCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCA 480728 || |||||||| |||||||| ||||| || || || |||| | ||| Sbjct 89217 CCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATGGTGTCAGAGGACTCGACCTCA 89158 Query 480729 AGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || || ||||| | |||||| ||||| || || Sbjct 89157 AGAGTGATGGTCTTGCCGGTCAAAGTCTTGACGAAGATCTG 89117 Score = 93.3 bits (102), Expect = 3e-13 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| || ||||| || |||||||| || || || || || ||||| | || || Sbjct 89107 ACGGAGGCGGAGAACGAGATGAAGGGTGGACTCCTTCTGAATGTTGTAATCCGAGAGGGT 89048 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | ||| || || ||||| ||||| || || ||||| || |||||||| ||||| || Sbjct 89047 ACGGCCATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGAATGCC 88988 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730 ||||||||| || ||||| |||||| ||||| || || | | || || Sbjct 88987 TTCCTTGTCCTGGATCTTAGCCTTGACATTGTCAATGGTGTCCGAAGGCTCGACCTCGAG 88928 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||| || || || |||||||| ||||| || || || || Sbjct 88927 GGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTG 88889 Score = 86.0 bits (94), Expect = 4e-11 Identities = 113/154 (73%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||| || ||||| |||||||| || ||||| || |||||||| |||||||||||||| Sbjct 167732 ATCTTCGAGCTGCTTACCAGCAAAGATGAGACGCTGCTGATCAGGGGGAATTCCTTCCTT 167791 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAA 480735 ||| || ||||| ||||| || || || || | | | | || ||||| | Sbjct 167792 GTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGA-CCTCGAGGGTGA 167850 Query 480736 TAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || ||||| ||||| || ||||| || || || Sbjct 167851 TCGTCTTACCCGTGAGGGTTTTAACAAAGATCTG 167884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268069989706808