Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900101485.1_202016-11-05] 2,546 sequences; 20,775,628 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq2030 95.1 4e-14 >seq2030 Length=31176 Score = 95.1 bits (104), Expect = 4e-14 Identities = 235/355 (66%), Gaps = 4/355 (1%) Strand=Plus/Minus Query 302491 TCAATTCCGTCATCGCCGTAGGAATACTGAATGATTTTGTTCTTGTTATTTCTTACGGTC 302550 || || || || || ||||||| ||||||||| ||||| | |||| ||||| Sbjct 15619 TCGATACCATCCTCTCCGTAGGCGAACTGAATGACGTTGTTGGTTGAGTTTCGAACGGTA 15560 Query 302551 ATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCA 302610 || || | | ||| | ||| || | ||||| |||||||||||||||||||| Sbjct 15559 CCGTCGTAGCAGACCATCACGTCCTCGAGCGCCTTGACCAAACGACGCTGAATATAACCG 15500 Query 302611 GTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAG 302670 || | || || || ||||| || || ||||| ||||||| |||| || |||||| Sbjct 15499 GTCTCTGCCGTCTTGACGGCTGTGTCGATAAGACCCTCACGACCTGCCATGGCGTGGAAG 15440 Query 302671 AATAGCTCTT--CCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCT 302728 || | || | |||| || || | | | ||| |||| ||||||||||| | Sbjct 15439 AAGAATTCCTGAGCGGT--AAGACCTCGGAGGTACGAGTTCTCGACGAAACCACGACTTT 15382 Query 302729 CGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGA 302788 |||| | |||| |||||| || || || || | | || | ||| | |||| Sbjct 15381 CGGGAGTGAAGTCGTCCTTGGTGAAATGAGGAAGACTGCGGTGGCGGAAACCGAAGGGGA 15322 Query 302789 TACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATT 302843 | ||||| || || ||| ||| ||||| | |||| ||||||||| || || Sbjct 15321 TGCGCTTACCCTCGACGGACTGTTGTCCAACACACGCTGACATCTGCGAGATGTT 15267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471769588390002