Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900101485.1_202016-11-05] 2,546 sequences; 20,775,628 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq1432 196 8e-44 seq1109 132 8e-25 seq2030 91.5 2e-12 >seq1432 Length=176812 Score = 196 bits (216), Expect = 8e-44 Identities = 245/333 (74%), Gaps = 15/333 (5%) Strand=Plus/Minus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 ||| ||||| ||| ||| | |||||| ||| ||| ||||||||||| |||||||| Sbjct 172872 ACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTGAGACCGGGCATGAGACCGCGCTT 172813 Query 794400 CTTGAGCCAAAAGAT---GGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGC 794456 ||||||||| ||||| |||| || | ||| ||||| ||||| || ||||||||||| Sbjct 172812 CTTGAGCCAGAAGATCGAGGCAAAGGA---GCCTGAGAAGAAGATACCTTCGACGGCGGC 172756 Query 794457 AAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGC 794516 |||| | ||||| ||||| || || ||| || || || ||||||||| | || Sbjct 172755 AAAGGCAACGAGACGCTCAGCGAAGGTGGCCTTGCGGTC---GTTGATCCATCGAAGGGC 172699 Query 794517 CCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAG---GTGGTC 794573 ||| || ||||| ||| | || ||| | || |||| |||| |||||| | | Sbjct 172698 CCATTCGGCCTTCTTCTTGACGACGGGGATAGTCTCGACGGCGTCAAAGAGAAACTCGCG 172639 Query 794574 CTTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGAT 794633 || |||| || || || ||||||||||||||||||||||||||| || |||||||| Sbjct 172638 CTGCTCG---GGCTCGCGGATGTAGGTGTCGATGAGGAGCGAGTAGGTTTCGGAGTGGAT 172582 Query 794634 GTTTTCGATGGCGATCTGGAAGCCATAAAAGCA 794666 ||| || || ||||||||| || || ||||| Sbjct 172581 GTTCTCCATCATGATCTGGAAACCGTAGAAGCA 172549 Score = 129 bits (142), Expect = 9e-24 Identities = 162/222 (73%), Gaps = 3/222 (1%) Strand=Plus/Minus Query 796141 AAACACCTGGCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCC 796200 || || | ||| |||| | |||||||| ||||||| || | |||||||| Sbjct 172553 AAGCATCGGGCTTCGGCGGCCTGGACCTCGGAACTGAAGCGCTCGACGAGGTTCTCGTTG 172494 Query 796201 ACGATGCCGTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCG 796260 ||||| ||||| |||||||| ||||| |||||||| ||| ||||||||||||| | Sbjct 172493 ACGATACCGTCAGAAGCGGCGAAGAAGGCAAGGACGTGAGAGATGAAGTGACGCTCGTTG 172434 Query 796261 TCGCTGAGC---GAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTC 796317 ||| ||||| | |||||| | ||| | |||||||| |||||||||||| Sbjct 172433 TCGTTGAGCTTGTTGTCCCAGTCGTGAAGGTCCTTGGAGAGGTCGATTTCCTCGGCGGTC 172374 Query 796318 CAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATCCGT 796359 || ||||| ||||||||||| |||||||| | ||| ||| || Sbjct 172373 CAGAAGGAAGCCTCGGCCTTCTTGTACATTTGCCAGATCTGT 172332 >seq1109 Length=147467 Score = 132 bits (146), Expect = 8e-25 Identities = 330/501 (66%), Gaps = 15/501 (3%) Strand=Plus/Plus Query 2073541 TGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGAC 2073600 |||||||| || || || |||| ||| ||||| |||||||||||||| | |||||| Sbjct 97158 TGGTCGACGTAACGAGCAGTGTTGTTGAAGACACGGAGCATGGGCACGATACCGTTGCTG 97217 Query 2073601 TCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCCG 2073660 | |||||||| || || | ||| | ||| | | || | ||| | | ||| Sbjct 97218 ACACCGTTGGTACCGGCAATGTAAGAGCCGGTACCACGAATGCAGTGGATGTTGAGACCG 97277 Query 2073661 ATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTCG 2073720 || || ||||| | ||||||||| | || || | || || || |||||||| || ||| Sbjct 97278 ATACCACCGGCGGTCTTGGAGATCATGGCACAGGTCTTGAGGGTGTCGTAGATCCCGTCG 97337 Query 2073721 ATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCCG 2073780 |||||||| |||||||| | || || ||||||||| || ||| | | || ||| Sbjct 97338 ATCGAGTCATCCTTCATGGTGACAAGGAAACACGACGAGAGCTGAGGGTGGGGGGTACCG 97397 Query 2073781 GCATTGAAGAGCGTGGGCGTCGCCGCCGTGTACGACTGTTGGGACATGGCCTCGTAGGTG 2073840 || ||||||||||| |||| || || | ||| ||| |||||| | ||| || Sbjct 97398 GCGTTGAAGAGCGTTGGCGAGGCATGAGTAAAGTACTTTTGCGACATGAGGTTGTACGTC 97457 Query 2073841 GCGAGCACGCGCGCCAGCGCGTCTTGGACGTCGGCAAACCCATAGTGGCCGATGGCGACG 2073900 | | | | | | | ||| ||| ||| | | | |||| ||||| Sbjct 97458 TCAATAGCACTCTCAA---TGTCCTGGCCGT--GAATA----------CCGACAGCGACA 97502 Query 2073901 CGCATGATCATGTACTGGGGTCGCTCGACGACGGCGTCGCGCACCTTGGTCAGGTAGGAC 2073960 ||||||||||||| |||||| ||||| |||| | || | | || |||||| Sbjct 97503 CGCATGATCATGTGCTGGGGACGCTCAGCGACCTTGCCGTTGATACGGAGCAAGTAGGAT 97562 Query 2073961 CGACGCAGGGTCGCCAGGCCAAAGTACGAGTAGGCCAGGTCGCGCTCGTGGCGGATGGCG 2074020 || |||||| | || ||| | |||| | ||||||||||| | |||||| Sbjct 97563 CGCTCGAGGGTCTTGAAACCGAAGAAGTTGTAGTGGAAGTCGCGCTCGTAGATGATGGCC 97622 Query 2074021 GCGTCGAGGGCCTCCTTGTGC 2074041 | |||||| ||||||||| Sbjct 97623 GAGTCGAGCTGGTCCTTGTGC 97643 >seq2030 Length=31176 Score = 91.5 bits (100), Expect = 2e-12 Identities = 125/170 (74%), Gaps = 6/170 (4%) Strand=Plus/Plus Query 429633 ACCTTCCGGCTCAACCTGGCCGTGACGGGCACCTACAACGCCGACTTTGACGGCGACGAG 429692 |||||||| |||||||| || ||| ||||||||||||| || ||||| |||||| Sbjct 14394 ACCTTCCGTCTCAACCTCAGTGTCACGCCTCCCTACAACGCCGATTTCGACGGTGACGAG 14453 Query 429693 ATGAACCTGCACGTGCCCCAG-TCGGAGATGGCACGCGCCGAAGTCGCCCACA--CCATG 429749 |||||| ||||||| || ||| || ||| | | || ||||| || | || | |||| Sbjct 14454 ATGAACTTGCACGTTCCGCAGAGCGAAGA-GACTCGTGCCGAGCTCTCGCAGATTGCATG 14512 Query 429750 GGCGTGGCCCTCAAGGCCGTGTCGCCGCAGGCCAACAAGCCCATCATCGG 429799 | || | | || |||||||| ||||||||||||||| |||| || Sbjct 14513 G--GTTCCTCGACAGATTGTGTCGCCTCAGGCCAACAAGCCCGTCATGGG 14560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915975570367694