Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900101485.1_202016-11-05] 2,546 sequences; 20,775,628 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq998 122 6e-23 seq9 102 5e-17 seq1042 96.9 2e-15 seq2517 91.5 1e-13 seq2472 91.5 1e-13 >seq998 Length=480981 Score = 122 bits (134), Expect = 6e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || || |||| |||| ||||||||||||||| || ||||| ||| | || |||| Sbjct 89097 AGAACGAGATGAAGGGTGGACTCCTTCTGAATGTTGTAATCCGAGAGGGTACGGCCATCC 89038 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| || |||||||| || || ||||| || | || | || |||||||| Sbjct 89037 TCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGAATGCCTTCCTTGTCC 88978 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || ||||| | || | || | |||||| || | ||| |||||| Sbjct 88977 TGGATCTTAGCCTTGACATTGTCAATGGTGTCCGAAGGCTCGACCTCGAGGGTGATGGTC 88918 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || ||||||||||| |||||||||||||| Sbjct 88917 TTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 88886 Score = 122 bits (134), Expect = 6e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||||| ||| ||||||||| ||||| |||||| | ||| |||| |||| Sbjct 167676 AGGACGAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCAAAAGGGTGCGACCATCT 167735 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| || || ||||| || || ||||| || | || | || |||||||| Sbjct 167736 TCGAGCTGCTTACCAGCAAAGATGAGACGCTGCTGATCAGGGGGAATTCCTTCCTTGTCC 167795 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | || | |||||| || | ||| || ||| Sbjct 167796 TGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGACCTCGAGGGTGATCGTC 167855 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || ||||||||||| || |||||||||||||| Sbjct 167856 TTACCCGTGAGGGTTTTAACAAAGATCTGCAT 167887 Score = 107 bits (118), Expect = 1e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||| ||||| ||||| || ||| |||| |||| || || ||||| || || || Sbjct 89305 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCAAGCTGCTTGCCAGCAAA 89246 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||| || || ||||| || | || | ||||||||||| | || || |||||| Sbjct 89245 GATGAGACGCTGCTGATCAGGGGGAATACCCTCCTTGTCCTGAATCTTGGCCTTGACGTT 89186 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | || | ||| || |||||| |||| || |||||||| || || | ||||| || Sbjct 89185 GTCGATGGTGTCAGAGGACTCGACCTCAAGAGTGATGGTCTTGCCGGTCAAAGTCTTGAC 89126 Query 34966 AAAGATCTGCAT 34977 ||||||||||| Sbjct 89125 GAAGATCTGCAT 89114 >seq9 Length=16159 Score = 102 bits (112), Expect = 5e-17 Identities = 92/116 (79%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 34748 TTTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCC 34807 || ||||| | ||| | || ||| ||||| | ||||||||||||||||||||| ||||| Sbjct 118 TTACCTCCACGCAAGCGCAAGACGAGGTGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCG 59 Query 34808 GATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTC 34863 || || |||| | || || |||||||| || || ||||||| ||| |||||||| Sbjct 58 GAAAGAGTGCGGCCGTCCTCGAGTTGCTTACCAGCAAAGATCAATCGCTGCTGGTC 3 >seq1042 Length=313568 Score = 96.9 bits (106), Expect = 2e-15 Identities = 134/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||||| |||| ||||||||| ||| | |||||||| ||| |||| | || Sbjct 114687 AGGACAAGGTGAAGGGTGGACTCCTTCTGGATGCTGTAGTCCGAGAGGGTGCGGCCGTCC 114628 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| || || ||||| || || |||||||| | || | ||||||||||| Sbjct 114627 TCGAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCGGGGGGGATACCCTCCTTGTCC 114568 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | || | ||| || |||| ||| |||||| Sbjct 114567 TGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATGGTC 114508 Query 34946 TTTCCCGT 34953 || || || Sbjct 114507 TTACCTGT 114500 >seq2517 Length=173 Score = 91.5 bits (100), Expect = 1e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 34780 GGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCC 34839 ||||||||||||||||||||| ||||| || || |||| | || || |||||||| || Sbjct 168 GGTGCTCTCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCGAGTTGCTTACC 109 Query 34840 GGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || ||||||| ||| |||||||| | || | || |||||||| Sbjct 108 AGCAAAGATCAATCGCTGCTGGTCAGGAGGAATACCTTCCTTGTC 64 >seq2472 Length=237 Score = 91.5 bits (100), Expect = 1e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| || || | ||||||||||||||||||||| ||||| || || |||| | || Sbjct 100 AGGACGAGATGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGGCCGTCC 41 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTC 34863 || |||||||| || || ||||||| ||| |||||||| Sbjct 40 TCGAGTTGCTTACCAGCAAAGATCAATCGCTGCTGGTC 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325682693955974