Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ustilago_20bromivora_20[genbank_20GCA_5F900101485.1_202016-11-05]
2,546 sequences; 20,775,628 total letters
Query= NC_023442.1
Length=120420
Score E
Sequences producing significant alignments: (Bits) Value
seq998 102 6e-17
>seq998
Length=480981
Score = 102 bits (112), Expect = 6e-17
Identities = 146/206 (71%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 29584 TGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGT 29643
||||| || || || || || ||||| || ||| || ||||||| ||| ||||| ||
Sbjct 167685 TGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCAAAAGGGTGCGACCATCTTCGAGCTGC 167744
Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703
|| |||||| | || | | |||||||| || ||||| || || ||||| || | ||
Sbjct 167745 TTACCAGCAAAGATGAGACGCTGCTGATCAGGGGGAATTCCTTCCTTGTCCTGGATCTTG 167804
Query 29704 TGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTT 29763
||||| | || | ||||| ||| || || || || || || || || || ||
Sbjct 167805 GCCTTGACGTTGTCGATGGTGTCCGAAGACTCGACCTCGAGGGTGATCGTCTTACCCGTG 167864
Query 29764 AAGGTTTTAACAAATATCTGCATTTT 29789
| |||||||||||| |||||||| ||
Sbjct 167865 AGGGTTTTAACAAAGATCTGCATCTT 167890
Score = 100 bits (110), Expect = 2e-16
Identities = 154/217 (71%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630
||| || || | ||| | || || || || || ||||| || || | | ||||||
Sbjct 89329 ACGGAGGACAAGATGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCC 89270
Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690
||| || || || ||||||||| | || | | |||||||| || ||||||||||| ||
Sbjct 89269 ATCTTCAAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGATCAGGGGGAATACCCTCCTT 89210
Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749
||| || ||| || | ||||| | || | |||||||| || || |||||||| |
Sbjct 89209 GTCCTG-AATCTTGGCCTTGACGTTGTCGATGGTGTCAGAGGACTCGACCTCAAGAGTGA 89151
Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
| || ||||| || || || || || || ||||||||
Sbjct 89150 TGGTCTTGCCGGTCAAAGTCTTGACGAAGATCTGCAT 89114
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 385207246888986
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |