Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900101485.1_202016-11-05] 2,546 sequences; 20,775,628 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq54 87.8 1e-11 >seq54 Length=31557 Score = 87.8 bits (96), Expect = 1e-11 Identities = 195/293 (67%), Gaps = 0/293 (0%) Strand=Plus/Minus Query 282182 ACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACT 282241 || ||||| || || || || ||||| || | | ||| | || | || || | || Sbjct 12217 ACGAGACGGTTGTCGAAGTCCTCACCACCAAGGTGAGTGTCACCAGCGGTGGCCTTGACC 12158 Query 282242 TGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCA 282301 | ||| | || || |||| | | || | |||||| ||| || || || | ||| Sbjct 12157 TCGAAGATACCCTCCTCAATTGTAAGGAGCGAAACATCGAAGGTACCTCCTCCGAGATCG 12098 Query 282302 AAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCA 282361 || || || || ||| | || || || || || ||||| || || | || ||| Sbjct 12097 AAGATGAGAACGTTCTTCTCACCTTCGGTCTTCTTGTCGAGACCGTAAGCGATGGCGGCA 12038 Query 282362 GCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTA 282421 ||||| || ||||||||||| | || ||| || ||||| | ||| | || ||||| || Sbjct 12037 GCAGTAGGCTCATTAATAATACGCATAACGTTGAGACCCGAAATGATACCGGCATCCTTG 11978 Query 282422 GTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATC 282474 || || || | || || ||||| || || || || ||||| | |||||||| Sbjct 11977 GTAGCCTGACGCTGAGAGTCGTTGAAGTAAGCGGGGACAGTGACGACGGCATC 11925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740505402159396