Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900101485.1_202016-11-05] 2,546 sequences; 20,775,628 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq1109 271 7e-68 seq998 141 9e-29 seq1432 140 3e-28 seq1042 98.7 1e-15 seq505 84.2 2e-11 >seq1109 Length=147467 Score = 271 bits (300), Expect = 7e-68 Identities = 1193/1856 (64%), Gaps = 53/1856 (3%) Strand=Plus/Plus Query 147951 GTGCGCAGATAGTACATGCCCGTCTTGAGGCCCATGCGCCATGCGTAGTCGTGCACCGAC 148010 || || || ||||| | ||||||||||| ||| | ||| ||||| ||||| ||| Sbjct 95796 GTACGGAGGTAGTAGGTACCCGTCTTGAGACCCTTCTTCCAGCCGTAGAAGTGCATCGAG 95855 Query 148011 GACA--TGAGCGTGTACGTCGGGTGCGG-CACAAACAGATTAAACGACTGGCTCTGGTCA 148067 | | ||| || |||| || |||| || | ||| | |||||| |||| | Sbjct 95856 GTGAGCTGACCGA--ACGTAGGA-GCGGACAGGTGGATATTGAGCGACTGCGACTGGCAA 95912 Query 148068 ATGAACGCGCCACGGTCAGCGGCCATTTCAATGAGTCGCTTTAT-CTTCATCTCCCAGGC 148126 ||||| || || || || |||||||| || |||| | || || | | ||||||||| | Sbjct 95913 ATGAAAGCACCTCGATCGGCGGCCATGTCGATGA-TGGCCTTCTGCGAGATCTCCCAGAC 95971 Query 148127 CGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATGCGCTGCACCGAGCCGCG 148186 |||||||| ||| ||||||| | ||||| || ||| || | || | |||||| Sbjct 95972 AGTCTTGTAGAGCTTCTTGATACGGTCGGGGATACCGGGGACGTTTTGGATGGAGCCGGC 96031 Query 148187 GTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTGAGCTCGATCAGGTCATC 148246 ||| || | || | || |||| ||| | | || | | |||| || || Sbjct 96032 GTGAGCGATGATTCGGTTTTTCATTGTGTCGTTCCAAAGTCTCTGTTCGACCAACTCGCG 96091 Query 148247 GATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGA-TACACGT 148305 || || | | || || ||||| || || || || || || || || ||| || | || Sbjct 96092 GAGCAACCAGGGGTTGACGACCTGGAATTCACCAGCAAGTACACGACG-AGAGTAAATGT 96150 Query 148306 TGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGG 148365 | || | || || || |||||||| |||||| ||||| ||||| || |||| Sbjct 96151 TCGAAGTGTAGGGCTCGAAGCACTCGTTGAAGCCCAAGATCTGACTGGTCGAAGCAGTGG 96210 Query 148366 GCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAG 148425 ||||| || | || || ||||| || | |||| | || || || ||| || | Sbjct 96211 GCATGGGTGCCAACAAGAGTGAGTTACGAAGACCGTGCTTGGCAATCTTAGCCTTGAGCG 96270 Query 148426 CCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCGC 148485 |||||||||||||| || || || ||| ||||||||| ||||| || || Sbjct 96271 AAGCCCAGTCCCAGAGGTCGGAGGGAGTGACGCCCCACATGTCATACTGAAGTTCTCCCT 96330 Query 148486 GGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCA-G 148544 || |||||| || | ||| | ||| | |||||| || |||| ||||| | Sbjct 96331 GGGAAGCGGGCGAACCTTGGTATGTCTCGTAGGTGCCGTGCTCCTGAGCCAACTCGCACG 96390 Query 148545 CTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCAGCGCCGCC 148604 |||| ||||| ||| ||| || || |||||| || ||| ||| | | || ||| Sbjct 96391 ATCGC-TCGAGAGCGGCGTGATAGATGGTCTCGAAGATCTGCACGTTCA--AACGACGC- 96446 Query 148605 GACTC---GCTTTCGTACGGCATA-CGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTAC 148660 | ||| | ||| | |||||| | || || || || ||||| || ||||| || Sbjct 96447 GCCTCAGGGGACTCGAA-GGCATAACCCATGATCATGAATGCATCGGCGAGACCCTGAAC 96505 Query 148661 GCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCGAGCGGATAGTG 148720 || | || ||||| ||||| |||||||| | || || || | || |||| Sbjct 96506 ACCGATACCGATGGGACGGTGACGCATGTTGGATCGACGAGCTTCTTCAACGGGGTAGTA 96565 Query 148721 GTTGCGGTCGATGATCTTGT-CAAGATTGCGCACCACCACCTTTGTAATTCTGCGCAGCA 148779 |||| |||||||||||||| |||| | ||| | | || | | |||| Sbjct 96566 GTTGATGTCGATGATCTTGTTCAAGTTCTTGCAG-ATGGCTTTGGCGACCTCATGCAGAC 96624 Query 148780 ATTCAAAATCGTA---CTTGTCATCTA---CGATGCATCGGTTCACGGCGATAGAGGCTA 148833 | |||||||| |||| | | ||||| | | | |||||| ||||| | Sbjct 96625 GCTTGAAATCGTAGACCTTGGTAACAGGGTCGATGAAGGTGGGGAGGGCGATGGAGGCCA 96684 Query 148834 GATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTGC 148893 ||||| || || |||||| ||||| |||||| | ||| |||| ||| || ||| Sbjct 96685 AGTTGCAGACAGCGACCTCATCGGGGGCAGAGTACTCGATGATTTCGGTGCAGAGGTTGG 96744 Query 148894 TGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTT-GCACGCGTCCTTGTAC 148952 ||| ||||| || | |||||| || ||| ||||| ||| ||| ||||||||||| Sbjct 96745 AGCACTTGATGGTACCGAGGTTCTTCTGGTTGGACTTGCGGTTAGCA-GCGTCCTTGTAG 96803 Query 148953 AGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTATGAACCGATGCAGGTCCTGC 149012 || ||| | || || || || ||| | || | ||| || ||| | | Sbjct 96804 AGGATGAAAGGATTACCGGTCTCGGTCTGAGACTCGAGGATGG--CGTACCAGAGCTTCT 96861 Query 149013 GCGCGCACTTG-CTGCTCGT----AGCGACCCTCCTGCTCGTATAAAGTATACAGCCGCT 149067 | || |||| | | ||| |||| ||||| |||||| || || |||| Sbjct 96862 GGGC---CTTGACGGTTCGCTTACAGCGTCCCTCAGCCTCGTAGCGCTCGTAGAGACGCT 96918 Query 149068 CGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGCGACC 149127 | ||| | || |||||||| ||| | || |||||||||| || |||||||||||||||| Sbjct 96919 CAAACTCGTCACCGTAGCAGTCGGCAAGGCCGGGGCACTCGTTAGGGCACATGAGCGACC 96978 Query 149128 ACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACATGA 149187 | |||| | | | || | |||||| || |||||||| ||||| || ||||| | || Sbjct 96979 AATCGCCATTCTGCTCGACCCTCTTCATGAAGAGATCGGGGACCCAAAGAGCGTAGAAGA 97038 Query 149188 GGTCGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTTGAGCACGCTGAATA 149247 | || || || || || || ||| ||||| || ||| | ||| | Sbjct 97039 GCTCACGGGCACGAACTTCCTCCTTACCGTGGTTCTTGCGCAAGTCGAGGAACTCGAAGA 97098 Query 149248 TGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGCTTG---CCGCCCT 149304 |||| |||||| ||||||||||| | || | || || |||||| || || | Sbjct 97099 CATCCGAGTGCCAAGGCTCAATGTAGATAGCAAAGGCACCAGGACGCTTGTTACCACCTT 97158 Query 149305 GGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCC---ACTGG 149361 ||||||||| || | ||||||| || || || | ||| || | || || ||| Sbjct 97159 GGTCGACGTAACGAGCAGTGTTGTTGAAGACACGGAGCATGGGCACGATACCGTTGCTGA 97218 Query 149362 CAGTGCCGTTAGTAGAGCTAATGCGACTGCCGCGCGCTCGCACTTTGTGCACGTTGACGC 149421 || ||||| ||| | |||| | |||| | || | ||| | ||||| | Sbjct 97219 CA---CCGTTGGTACCGGCAATGTAAGAGCCGGTACCACGAATGCAGTGGATGTTGAGAC 97275 Query 149422 CGATGCCGCCGCCGTACTTTGAGATGGCCGCGCAGTCGCCGAGCGTCGAGTAGATGCCCT 149481 |||| || ||| || ||| ||||| || ||| ||| || |||||| || | Sbjct 97276 CGATACCACCGGCGGTCTTGGAGATCATGGCACAGGTCTTGAGGGTGTCGTAGATCCCGT 97335 Query 149482 CGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAAACGCGTGC 149541 |||| ||| ||||||||| | || || ||||| | | || || | || | Sbjct 97336 CGATCGAGTCATCCTTCATGGTGACAAGGAAACACGACGAGAGCTGAGGGTGGGGGGTAC 97395 Query 149542 CGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTCTGGCTCATCATCTCGTACG 149601 |||| ||| | || || ||| || ||||| || || || ||| | | ||||| Sbjct 97396 CGGCGTTGAAGAGCGTTGGCGAGGCATGAGTAAAGTACTTTTGCGACATGAGGTTGTACG 97455 Query 149602 ACTC--GAGCACGCGGTCCATGTCATCGCCATGGATGCCTATGGCGACGCGCATCAGCAT 149659 ||| ||||| | || ||||| | ||| || || || | ||||| ||||| | ||| Sbjct 97456 TCTCAATAGCACTC--TCAATGTCCTGGCCGTGAATACCGACAGCGACACGCATGATCAT 97513 Query 149660 ATGCTGCGGTCGCTCCGCCACTTTGTTTCCAATTTTGAGCAAGTAGCCGTTTTCTAGTGT 149719 ||||| || ||||| || || ||| || |||||||||| || || || Sbjct 97514 GTGCTGGGGACGCTCAGCGACCTTGCCGTTGATACGGAGCAAGTAGGATCGCTCGAGGGT 97573 Query 149720 CTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCGGCCGTGGTCAATGGCGGCGTCGA 149775 |||| | || ||| | ||||||| |||||||| ||| | ||||| | ||||| Sbjct 97574 CTTGAAACCGAAGAAGTTGTAGTGGAAGTCGCGCTCGTAGATGATGGCCGAGTCGA 97629 >seq998 Length=480981 Score = 141 bits (156), Expect = 9e-29 Identities = 156/206 (76%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAG--TCCTCGAGC 133514 ||| | ||||||||| ||||| || |||||||| | | | | ||| ||||||||| Sbjct 89089 ATGAAGGGTGGACTCCTTCTGAATGTTGTAATC--CGAGAGGGTACGGCCATCCTCGAGC 89032 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 |||||||| ||| | ||||| |||||||| || || || |||||||||||||| |||| Sbjct 89031 TGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATC 88972 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||||| | |||| ||||| | ||||| || |||| ||||| ||| |||||| Sbjct 88971 TTAGCCTTGACATTGTCAATGGTGTCCGAAGGCTCGACCTCGAGGGTGATGGTCTTGCCG 88912 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 || || || || || || |||||||| Sbjct 88911 GTGAGGGTCTTGACAAAGATCTGCAT 88886 Score = 102 bits (112), Expect = 8e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||| ||| | ||| | | | || || ||||||||||| Sbjct 89310 GTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCA-TCTTCAAGCTGCTTGCC 89252 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | ||||| |||||||| || || || || || |||||||| ||||| ||| Sbjct 89251 AGCAAAGATGAGACGCTGCTGATCAGGGGGAATACCCTCCTTGTCCTGAATCTTGGCCTT 89192 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | ||||| | || ||| || || | |||| ||| |||||||||| ||| Sbjct 89191 GACGTTGTCGATGGTGTCAGAGGACTCGACCTCAAGAGTGATGGTCTTGCCGGTCAAAGT 89132 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 89131 CTTGACGAAGATCTGCAT 89114 Score = 100 bits (110), Expect = 3e-16 Identities = 143/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||| ||||| || ||||| || | ||| ||| | || ||||||||||| | Sbjct 167690 GGTAGACTCCTTCTGGATGTTGTAGTCCAAAAGGGTGCGACCA-TCTTCGAGCTGCTTAC 167748 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||| |||||||| || || || || ||||||||||| |||||| || Sbjct 167749 CAGCAAAGATGAGACGCTGCTGATCAGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCCT 167808 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | || | ||||| | | ||| || |||| ||||| || || || || || | Sbjct 167809 TGACGTTGTCGATGGTGTCCGAAGACTCGACCTCGAGGGTGATCGTCTTACCCGTGAGGG 167868 Query 133642 TTTTTACGAAAATCTGCAT 133660 |||| || || |||||||| Sbjct 167869 TTTTAACAAAGATCTGCAT 167887 >seq1432 Length=176812 Score = 140 bits (154), Expect = 3e-28 Identities = 348/521 (67%), Gaps = 12/521 (2%) Strand=Plus/Minus Query 120640 AGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTC 120699 ||||| ||||| || ||||| || |||||||| || || || ||||||||| || || Sbjct 172895 AGGCAGGCAAAATCGGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTG 172836 Query 120700 AGGCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAG 120759 || |||||||||| || | |||||| |||| || | ||||||| ||| || ||| Sbjct 172835 AGACCGGGCATGAGACCGCGCTTCTTGAGCCAGAAGATCGAGGCAAAGGAGCCTGAGAAG 172776 Query 120760 AACACGCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTG 120819 || | || || ||| ||||||||| || | ||||| || || || ||| |||| | Sbjct 172775 AAGATACCTTCGACGGCGGCAAAGGCAACGAGACGCTCAGCGAAGGTGGCC---TTGCGG 172719 Query 120820 TCG---ATCCACTTCATGGCCCACTCGGCCTTTTTGCGCACGCACGGCATCCGCTCGAAC 120876 ||| ||||| | |||||| |||||||| || ||| || || ||||| Sbjct 172718 TCGTTGATCCATCGAAGGGCCCATTCGGCCTTCTTCTTGACGACGGGGATAGTCTCGACG 172659 Query 120877 GCGTTCAGCAGCATGTCGCGCTCGCCCTCCTC-CGCAATCAGCTGATGGATGAGCAGATT 120935 |||| | || | ||||||| | ||| || | || || | |||||| || Sbjct 172658 GCGTCAAAGAGAAACTCGCGCTGCTCGGGCTCGCGGATGTAGGTG-TCGATGAGGAGCGA 172600 Query 120936 GTACATTTCCGTGTGCACGCACTCGATCAGCACTTGCTGGTTGTAAAAGTACTGCGCCTC 120995 ||| |||| | ||| | | ||| |||| | || ||| ||| | | || || Sbjct 172599 GTAGGTTTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCATCGGGCTTC 172540 Query 120996 --CAGCTCGGGCACCGCCCGCTGCATGTACTCGATAAGGTTAATATTCACGATACTGTCG 121053 | || || | || ||| | | ||||| ||||| || ||||||| ||| Sbjct 172539 GGCGGCCTGGACCTCGGAA-CTGAA-GCGCTCGACGAGGTTCTCGTTGACGATACCGTCA 172482 Query 121054 GCGGCGGCGAAGAACGCCAGCACGTGCTTGATAAAGTGTCGCTCGTCGTCCGTGAGCTTG 121113 | ||||||||||| || || ||||| ||| ||||| ||||||| ||| |||||||| Sbjct 172481 GAAGCGGCGAAGAAGGCAAGGACGTGAGAGATGAAGTGACGCTCGTTGTCGTTGAGCTTG 172422 Query 121114 TGCGCAAAATCGTCATAGTCCTTGGACAGGTCGACCTCCTC 121154 | | | |||| | ||||||||| ||||||| ||||| Sbjct 172421 TTGTCCCAGTCGTGAAGGTCCTTGGAGAGGTCGATTTCCTC 172381 >seq1042 Length=313568 Score = 98.7 bits (108), Expect = 1e-15 Identities = 126/174 (72%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||| ||||| || |||| || | ||| ||||||||||||||| || Sbjct 114673 GGTGGACTCCTTCTGGATGCTGTAGTCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTACC 114614 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | ||||| |||||||||||||| ||||| || |||||||| |||||| ||| Sbjct 114613 AGCAAAGATGAGACGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGGATCTTGGCCTT 114554 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 || | || | ||||||| | |||||| || | ||||| ||| || || || Sbjct 114553 GACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATGGTCTTACCTGT 114500 >seq505 Length=37254 Score = 84.2 bits (92), Expect = 2e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 133540 GCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGT 133599 ||||||| ||||| || ||||||||||| |||||| ||||| | || | |||| Sbjct 37254 GCTGGTCAGGAGGAATACCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGT 37195 Query 133600 CGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCA 133659 | | || ||| || |||| |||| || || ||||||||||| || ||||| ||||||| Sbjct 37194 CCGAGGACTCGACTTCGAGAGTGATCGTCTTACCGGTCAGAGTCTTGACGAAGATCTGCA 37135 Query 133660 T 133660 | Sbjct 37134 T 37134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483405415133040