Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900101485.1_202016-11-05] 2,546 sequences; 20,775,628 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq1109 122 8e-23 >seq1109 Length=147467 Score = 122 bits (134), Expect = 8e-23 Identities = 617/967 (64%), Gaps = 31/967 (3%) Strand=Plus/Plus Query 147459 GGCGATAGACGCCAGATTGCAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATTTC 147518 |||||| || |||| |||||||| || ||| |||| | | ||||| | |||||| Sbjct 96671 GGCGATGGAGGCCAAGTTGCAGACAGCGACCTCATCGGGGGCAGAGTACTCGATGATTTC 96730 Query 147519 GGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATT-GC 147577 || ||| |||||| ||| || ||| || | || | ||| ||| || || || || Sbjct 96731 GGTGCAGAGGTTGGAGCACTTGATGGTACCGAGGTTCTTCTGGTTGGACTTGCGGTTAGC 96790 Query 147578 ACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGATAAACC 147637 | ||||| ||| |||| ||| | || ||||||||| || | || | ||| | Sbjct 96791 A-GCGTCCTTGTAGAGGATGAAAGGATTACCGGTCTCGGTCTGAGACTCGAGGATGG-CG 96848 Query 147638 TATGC-AGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCG 147696 || || | ||| || || || | |||| ||||| ||||| |||||| Sbjct 96849 TACCAGAGCTTCTGGGCCTTGACGGTTCGCTTACAGCGTCCCTCAGCCTCGTAGCGCTCG 96908 Query 147697 TACAACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACAC 147756 || | |||||||||||||| |||||||| |||||||||||||| |||| | || ||| Sbjct 96909 TAGAGACGCTCAAACTCGTCACCGTAGCAGTCGGCAAGGCCGGGGCACTCGTTAGGGCAC 96968 Query 147757 ATCAGCGACCACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGC 147816 || |||||||| | | | | | || | ||| || ||||| || ||||| || Sbjct 96969 ATGAGCGACCAATCGCCATTCTGCTCGACCCTCTTCATGAAGAGATCGGGGACCCAAAGA 97028 Query 147817 GCGTACATAAGATCGCGCGC-----TTTGCAATCCTCGGCGCCCATGTTGCGTTTCAAAT 147871 ||||| | || || || || || | |||| || | ||||| ||| | Sbjct 97029 GCGTAGAAGAGCTCACGGGCACGAACTTCC--TCCTTACCGTGGTTCTTGCG---CAAGT 97083 Query 147872 -TAAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTA 147930 | | || | | ||| || | |||||| || |||||||||| || | ||||| | Sbjct 97084 CGAGGAACTCGA-AGACATCCGAGTGCCAAGGCTCAATGTAGATAGCAAAGGCACCAGGA 97142 Query 147931 CGC---TTTCCGCCCTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGT 147987 ||| || || || |||||||| | || | ||||||| || || || | |||||| Sbjct 97143 CGCTTGTTACCACCTTGGTCGACGTAACGAGCAGTGTTGTTGAAGACACGGAGCATGGGC 97202 Query 147988 TCCAGGCCGCTCGCAG-TGCCGTTGGT---GGAATTGATCTTGCTGCCGCGGGCTCGCAC 148043 | | ||| | || | |||||||| || | || | |||| | || | Sbjct 97203 ACGATACCG-TTGCTGACACCGTTGGTACCGGCA---ATGTAAGAGCCGGTACCACGAAT 97258 Query 148044 TTCGTGCACGTTAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAATCGCC--C 148101 ||| | ||| | || || || ||| || ||| || || || ||| | | Sbjct 97259 GCAGTGGATGTTGAGACCGATACCACCGGCGGTCTTGGAGAT--CATGGCACAGGTCTTG 97316 Query 148102 AATGTCGTGTAGATGCCGTCGATGCTGTCGTTTTTGACGCCAAGCAAAAAACACGAACAC 148161 | || |||||| |||||||| ||| | || | | | | |||||||| | Sbjct 97317 AGGGTGTCGTAGATCCCGTCGATCGAGTCATCCTTCATGGTGACAAGGAAACACGACGAG 97376 Query 148162 ATTTGCGGAATCCGCGTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTT 148221 | || || | || || || ||| || || || || || ||||| | ||| Sbjct 97377 AGCTGAGGGTGGGGGGTACCGGCGTTGAAGAGCGTTGGCGAGGCATGAGTAAAGTACTTT 97436 Query 148222 TGACTCATCATGCGATACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGC 148281 || ||| | | |||||||||||||| || ||||| | ||||||||| || | Sbjct 97437 TGCGACATGAGGTTGTACGTCTCAATAGCACTCTCAATGTCCTGGCCGTGAATACCGACA 97496 Query 148282 GCGACGCGCATGAGCATGTGCTGTGGTCGTTCGGCAACTTGATTGTTGATCTTGAGAAGA 148341 ||||| ||||||| ||||||||| || || || || || | |||||| ||| | Sbjct 97497 GCGACACGCATGATCATGTGCTGGGGACGCTCAGCGACCTTGCCGTTGATACGGAGCAAG 97556 Query 148342 TATCCATTTTCGAGGGTTTTGTAACCAAAGTACTTGTAATCAAAATCTAGCTCGTAAGCG 148401 || |||||||| ||| |||| ||| | ||||| | || || ||||||| | Sbjct 97557 TAGGATCGCTCGAGGGTCTTGAAACCGAAGAAGTTGTAGTGGAAGTCGCGCTCGTAGATG 97616 Query 148402 ATGGCCG 148408 ||||||| Sbjct 97617 ATGGCCG 97623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476596031848560