Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900101485.1_202016-11-05] 2,546 sequences; 20,775,628 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq1042 143 3e-29 >seq1042 Length=313568 Score = 143 bits (158), Expect = 3e-29 Identities = 431/664 (65%), Gaps = 40/664 (6%) Strand=Plus/Plus Query 146872 ATCTTGAGCTTGGGGAAGGGTCGGGGGTTCCTGGCC-AGCTGAATTTTCAGGGGCTCCAC 146930 || ||||||||||||||||| | ||||| | | ||||| || || || ||||| || Sbjct 42023 ATGTTGAGCTTGGGGAAGGG-CAATGGTTCACGCTCGAGCTGGATCTTGAGTGGCTCTAC 42081 Query 146931 GTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGCC 146990 ||| | ||||||||| ||||| |||| | |||| | ||| |||| | Sbjct 42082 GTGATCTTTGTAGACGTGAGCGTCTCCCATCGAAAGCACGAGTTCCTTGGGCTCGCAATC 42141 Query 146991 GGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCC 147050 || || | || | ||| |||||||||| | ||||||||| |||||||||||||| || Sbjct 42142 AGTGACTTTAGCGATCATATAGGTGAGCAAAGCGTAGCTGGCAATGTTGAAGGGGACTCC 42201 Query 147051 CAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCT--------CCCC---- 147098 || || | || | || | ||||||| || || ||||||| |||| Sbjct 42202 CAACCCGAGATCGCAGGAACGTTGGTACATTTGACAAGAGAGCTGCTTCTTGCCCCAACC 42261 Query 147099 ------------------GTCGGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAG 147140 || || ||| | |||||||| | |||||||| || || || Sbjct 42262 CTTTGCGTAAGCGTCGAGGTTGGAGACGAAGAACTGGCAGAACATGTGGCAAGGAGGGAG 42321 Query 147141 CGCCATGGCGGGCAGGTCCGCGGGGTTCCAGGCCGAGACCACCAGCCGCCTGCTCTC--- 147197 |||||| | || || ||||||||| || || || || ||||| || Sbjct 42322 AGCCATGAGAGCAAGATCTTTGGGGTTCCATGCACTGAGCA--AG-ATCCTGCGATCGGT 42378 Query 147198 GGGGTTCCTCTTAATCTCTTCGATAACCCACCTCAGCTGGTCCACGCCCTGGCCCCCGTA 147257 |||||| |||| |||| || || || | || ||||| ||||| || || ||| Sbjct 42379 GGGGTTGTTCTTGATCTTGTCAATGACTTCACGCAATTGGTCAACGCCTTGACCGGTGTA 42438 Query 147258 GTTTGTCCCGCAGTCCACGTACCTGGCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGG 147317 || || |||||||| ||| || |||||||| | ||| ||||||||||| ||||| Sbjct 42439 GTCGGTGTCGCAGTCCTTGTATTCTGCGCCAAAGTGTCGCCATTGGAAGCCGTAGACTGG 42498 Query 147318 CCCCAGGTCGCCGGGCTTTCTGTGCGAGAAG-CCCGCCCGCTTGAGAAACTCGGGGGACC 147376 |||| || || | ||| ||| | || | | ||| ||||| | || | Sbjct 42499 ACCCAAATCACCTTCTCGCCGGTGTTGCAAGTCACGTGAG-TCGAGGAACTCTCGCGATC 42557 Query 147377 CGTGGGCGTCCCAGATGCCCACTCCCTTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCC 147436 ||| ||||||||||| ||| |||||| | | || ||| ||||| || ||| Sbjct 42558 CGTTACCGTCCCAGATGTGCACGCCCTTGTCAGTAAGAAGCTTGGAGTCGGTCTTGCCAG 42617 Query 147437 GGATGAACCAGAGCAGCTCCTCCAAAACCCCCCTCCAAAAGACCCTCTTGGTGGTCAGCA 147496 | |||||||| |||||||||| || || | | | ||||| | ||| ||||| |||| Sbjct 42618 CCACAAACCAGAGGAGCTCCTCCAGTACGCCTCGCAAGAAGACACGCTTTGTGGTGAGCA 42677 Query 147497 GGGG 147500 | || Sbjct 42678 GAGG 42681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583469430494400