Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900101485.1_202016-11-05] 2,546 sequences; 20,775,628 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq998 127 2e-24 seq2517 93.3 4e-14 >seq998 Length=480981 Score = 127 bits (140), Expect = 2e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 |||||||| || || || ||||| || ||||||||||| || |||| || || ||| Sbjct 167679 ACGAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCAAAAGGGTGCGACCATCTTCG 167738 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 ||||| || || ||||| || | |||||||||||| || || || ||||| || || || Sbjct 167739 AGCTGCTTACCAGCAAAGATGAGACGCTGCTGATCAGGGGGAATTCCTTCCTTGTCCTGG 167798 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || ||||| ||| | ||||| || || || || ||||| || || || ||| Sbjct 167799 ATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGACCTCGAGGGTGATCGTCTTA 167858 Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 || || | |||||||| || || ||||| ||| Sbjct 167859 CCCGTGAGGGTTTTAACAAAGATCTGCATCTTG 167891 Score = 116 bits (128), Expect = 4e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 134517 GTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCT 134576 || || ||||| || |||||||||||| | |||| | || || ||||| ||||| Sbjct 89310 GTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCAAGCTGCTTGCCA 89251 Query 134577 GCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTG 134636 ||||| || | |||||||||||| || || || || || || || ||||| || ||| Sbjct 89250 GCAAAGATGAGACGCTGCTGATCAGGGGGAATACCCTCCTTGTCCTGAATCTTGGCCTTG 89191 Query 134637 ACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTT 134696 || ||| | ||||| || || || || || ||||| ||||| || ||||| ||||| Sbjct 89190 ACGTTGTCGATGGTGTCAGAGGACTCGACCTCAAGAGTGATGGTCTTGCCGGTCAAAGTC 89131 Query 134697 TTAACGAAAATTTGCAT 134713 || ||||| || ||||| Sbjct 89130 TTGACGAAGATCTGCAT 89114 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | ||||| || || ||||| ||||| ||||||||||| || Sbjct 89112 CCACCACGGAGGCGGAGAACGAGATGAAGGGTGGACTCCTTCTGAATGTTGTAATCCGAG 89053 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || |||||||| ||||| || || || | |||||||||||| || || Sbjct 89052 AGGGTACGGCCATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGA 88993 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || || || || || ||||| ||| | ||||| || | || || Sbjct 88992 ATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTGTCAATGGTGTCCGAAGGCTCGACC 88933 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || ||||| || ||||| | || || || || || ||||| Sbjct 88932 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 88886 >seq2517 Length=173 Score = 93.3 bits (102), Expect = 4e-14 Identities = 117/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 134523 TCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAA 134582 ||||| ||||||||||||||| || ||| | ||| ||||| || || || ||||| Sbjct 161 TCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCGAGTTGCTTACCAGCAAAG 102 Query 134583 ATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCG 134642 ||||| |||||||| || || || || ||||| || || || || || ||||| | Sbjct 101 ATCAATCGCTGCTGGTCAGGAGGAATACCTTCCTTGTCCTGGATCTTGGCCTTGACATTG 42 Query 134643 TCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTT 134683 || | ||||| || || || || |||||||| || || || Sbjct 41 TCGATGGTGTCCGAGGACTCGACTTCGAGAGTGATCGTCTT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505382315695920